miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8092 5' -54.9 NC_001978.2 + 40222 0.66 0.649978
Target:  5'- -uCGUCGUCGGUCG-GCGGCuucgcccacguGAUCGAa -3'
miRNA:   3'- cuGCAGCAGUCGGCgCGUUG-----------CUAGUU- -5'
8092 5' -54.9 NC_001978.2 + 20471 0.66 0.638621
Target:  5'- cGGCGaCGUCGGCCgaccgGCGCGAC--UCGAc -3'
miRNA:   3'- -CUGCaGCAGUCGG-----CGCGUUGcuAGUU- -5'
8092 5' -54.9 NC_001978.2 + 23987 0.66 0.627258
Target:  5'- aGCGUCGagcacgcucacUCAGCacaGCGCGACGggCu- -3'
miRNA:   3'- cUGCAGC-----------AGUCGg--CGCGUUGCuaGuu -5'
8092 5' -54.9 NC_001978.2 + 25512 0.66 0.627258
Target:  5'- cGACGUCGUUcGCCcgguucccGCGC-AUGGUCGu -3'
miRNA:   3'- -CUGCAGCAGuCGG--------CGCGuUGCUAGUu -5'
8092 5' -54.9 NC_001978.2 + 36349 0.66 0.604556
Target:  5'- cGACGcccuUCGUCAGCgCGCaCAGCGAa--- -3'
miRNA:   3'- -CUGC----AGCAGUCG-GCGcGUUGCUaguu -5'
8092 5' -54.9 NC_001978.2 + 9281 0.67 0.593238
Target:  5'- -uUGUCGUCGGCCGuCGCucCGGcCGGa -3'
miRNA:   3'- cuGCAGCAGUCGGC-GCGuuGCUaGUU- -5'
8092 5' -54.9 NC_001978.2 + 6724 0.67 0.570716
Target:  5'- -cCGUUGUCAcgacGCCGgGCAAucCGGUCGAc -3'
miRNA:   3'- cuGCAGCAGU----CGGCgCGUU--GCUAGUU- -5'
8092 5' -54.9 NC_001978.2 + 1672 0.67 0.55953
Target:  5'- --gGUCGUUGGCgGCaGCGAUGAUCu- -3'
miRNA:   3'- cugCAGCAGUCGgCG-CGUUGCUAGuu -5'
8092 5' -54.9 NC_001978.2 + 17664 0.67 0.537354
Target:  5'- aGGCGUgGUCgAGCCGC-CAACG-UCGc -3'
miRNA:   3'- -CUGCAgCAG-UCGGCGcGUUGCuAGUu -5'
8092 5' -54.9 NC_001978.2 + 12121 0.67 0.537354
Target:  5'- aGACGUgcCGgaagCcGCCGCGCGccguaGCGAUCAc -3'
miRNA:   3'- -CUGCA--GCa---GuCGGCGCGU-----UGCUAGUu -5'
8092 5' -54.9 NC_001978.2 + 16234 0.68 0.526379
Target:  5'- uGACGUCGgucaacacgaAGCCGgGUccGACGGUCAc -3'
miRNA:   3'- -CUGCAGCag--------UCGGCgCG--UUGCUAGUu -5'
8092 5' -54.9 NC_001978.2 + 38430 0.68 0.526379
Target:  5'- uACGacCGUCAGUCGCGCGagcGCGAgaauUCGAg -3'
miRNA:   3'- cUGCa-GCAGUCGGCGCGU---UGCU----AGUU- -5'
8092 5' -54.9 NC_001978.2 + 15414 0.68 0.493992
Target:  5'- cGGCGUCGUUGGCgCGCGCAccuauuccAUGGUg-- -3'
miRNA:   3'- -CUGCAGCAGUCG-GCGCGU--------UGCUAguu -5'
8092 5' -54.9 NC_001978.2 + 32062 0.69 0.472915
Target:  5'- --aGUCGUCggAGCCGgGCAA-GAUCAGu -3'
miRNA:   3'- cugCAGCAG--UCGGCgCGUUgCUAGUU- -5'
8092 5' -54.9 NC_001978.2 + 23918 0.69 0.4523
Target:  5'- cGGCGUCGUCAGaaGCGguGCGcAUgGu -3'
miRNA:   3'- -CUGCAGCAGUCggCGCguUGC-UAgUu -5'
8092 5' -54.9 NC_001978.2 + 9791 0.69 0.442178
Target:  5'- -cCGUCGUCGGCCGUugagacgcuggGCAA-GGUCGAc -3'
miRNA:   3'- cuGCAGCAGUCGGCG-----------CGUUgCUAGUU- -5'
8092 5' -54.9 NC_001978.2 + 5595 0.69 0.432185
Target:  5'- cACGg-GUCAGCCGCGCGGC-AUCc- -3'
miRNA:   3'- cUGCagCAGUCGGCGCGUUGcUAGuu -5'
8092 5' -54.9 NC_001978.2 + 28739 0.69 0.431193
Target:  5'- -cCGUCGUCGgauuggaugauucGCCGCGCGAUuGUCGGa -3'
miRNA:   3'- cuGCAGCAGU-------------CGGCGCGUUGcUAGUU- -5'
8092 5' -54.9 NC_001978.2 + 24566 0.7 0.393577
Target:  5'- uGCGuUCGUCGGCgGCGUcAUGGUCGg -3'
miRNA:   3'- cUGC-AGCAGUCGgCGCGuUGCUAGUu -5'
8092 5' -54.9 NC_001978.2 + 26410 0.71 0.339183
Target:  5'- cGCGUCGUCauggugaAGCCGCGCGACuccggCAGg -3'
miRNA:   3'- cUGCAGCAG-------UCGGCGCGUUGcua--GUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.