miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8094 3' -56.4 NC_001978.2 + 17860 0.69 0.449905
Target:  5'- aCGCGGcauaguUGGucguGUCGGCGUCGGACCa- -3'
miRNA:   3'- -GCGCUu-----GCCu---CAGCUGCGGCUUGGcc -5'
8094 3' -56.4 NC_001978.2 + 17525 0.74 0.242209
Target:  5'- uGCGGGCGGcuccGUCucCGCCGAcCCGGa -3'
miRNA:   3'- gCGCUUGCCu---CAGcuGCGGCUuGGCC- -5'
8094 3' -56.4 NC_001978.2 + 16693 0.66 0.659999
Target:  5'- uGCGGucaACGcauGUCGGCGCCGuuCCGc -3'
miRNA:   3'- gCGCU---UGCcu-CAGCUGCGGCuuGGCc -5'
8094 3' -56.4 NC_001978.2 + 16492 0.68 0.496738
Target:  5'- aCGUGAcgggcuucaacaucACGGAGcCGACGaCCGuaAACCGa -3'
miRNA:   3'- -GCGCU--------------UGCCUCaGCUGC-GGC--UUGGCc -5'
8094 3' -56.4 NC_001978.2 + 16319 0.7 0.415729
Target:  5'- uGCGGACGGAGUUGcccCGCuCGAcuccgcgaagcgccuGCCGa -3'
miRNA:   3'- gCGCUUGCCUCAGCu--GCG-GCU---------------UGGCc -5'
8094 3' -56.4 NC_001978.2 + 13947 0.66 0.616578
Target:  5'- uCGUGAuuACGGAGcgcUCGACGUCGuugaugagaacGGCaCGGa -3'
miRNA:   3'- -GCGCU--UGCCUC---AGCUGCGGC-----------UUG-GCC- -5'
8094 3' -56.4 NC_001978.2 + 13660 0.69 0.469547
Target:  5'- uCGCGccuAUGcGGUCGGCGCCGAcaaCGGc -3'
miRNA:   3'- -GCGCu--UGCcUCAGCUGCGGCUug-GCC- -5'
8094 3' -56.4 NC_001978.2 + 13638 1.11 0.000546
Target:  5'- gCGCGAACGGAGUCGACGCCGAACCGGg -3'
miRNA:   3'- -GCGCUUGCCUCAGCUGCGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 13196 0.69 0.449905
Target:  5'- aGCGuguCGGGGUCGgcaGCGUCGAGCgGc -3'
miRNA:   3'- gCGCuu-GCCUCAGC---UGCGGCUUGgCc -5'
8094 3' -56.4 NC_001978.2 + 12636 0.66 0.638299
Target:  5'- uCGUGAAccaaucgcCGGAGUCGA-GCCGcACCc- -3'
miRNA:   3'- -GCGCUU--------GCCUCAGCUgCGGCuUGGcc -5'
8094 3' -56.4 NC_001978.2 + 12457 0.73 0.274921
Target:  5'- gCGUGAACGuGGUCGACGCCu--UCGGc -3'
miRNA:   3'- -GCGCUUGCcUCAGCUGCGGcuuGGCC- -5'
8094 3' -56.4 NC_001978.2 + 11441 0.67 0.594909
Target:  5'- uCGUGAuggcACGGgcacgcaagcGGUCGGCGCCGcucGACCu- -3'
miRNA:   3'- -GCGCU----UGCC----------UCAGCUGCGGC---UUGGcc -5'
8094 3' -56.4 NC_001978.2 + 11063 0.73 0.281873
Target:  5'- uCGCGAACGG-GUCGGCGUucgucugcacguUGAccgucacgccGCCGGa -3'
miRNA:   3'- -GCGCUUGCCuCAGCUGCG------------GCU----------UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 9144 0.67 0.573363
Target:  5'- aGC---CGGAGUCG-CGCCcAACUGGg -3'
miRNA:   3'- gCGcuuGCCUCAGCuGCGGcUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 8601 0.72 0.311074
Target:  5'- gCGCGAAgcauCGGGGcaCGGCG-CGAACCGGc -3'
miRNA:   3'- -GCGCUU----GCCUCa-GCUGCgGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 7976 0.66 0.638299
Target:  5'- aCGUGAgcuugauuGCGGGcGUC-ACGCCGucgcCCGGg -3'
miRNA:   3'- -GCGCU--------UGCCU-CAGcUGCGGCuu--GGCC- -5'
8094 3' -56.4 NC_001978.2 + 7174 0.75 0.201928
Target:  5'- gGCGAACuuGAGauugacguacUCGACGCCGgAGCCGGu -3'
miRNA:   3'- gCGCUUGc-CUC----------AGCUGCGGC-UUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 5999 0.67 0.605733
Target:  5'- gCGCGccGACGGucuucuuGUCGACGCCcgGGGCgCGa -3'
miRNA:   3'- -GCGC--UUGCCu------CAGCUGCGG--CUUG-GCc -5'
8094 3' -56.4 NC_001978.2 + 5615 0.68 0.510081
Target:  5'- gGCGAcccAUGGcGUcacCGAUgGCCGGACCGGc -3'
miRNA:   3'- gCGCU---UGCCuCA---GCUG-CGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 5497 0.66 0.627437
Target:  5'- cCGCccaugGAACGcuGAGUCGugGCCGggUagcucucaGGa -3'
miRNA:   3'- -GCG-----CUUGC--CUCAGCugCGGCuuGg-------CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.