miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8094 3' -56.4 NC_001978.2 + 28039 0.66 0.627437
Target:  5'- uGCGuucuACGucGAcccGUCGGCGCCGGACacucaGGg -3'
miRNA:   3'- gCGCu---UGC--CU---CAGCUGCGGCUUGg----CC- -5'
8094 3' -56.4 NC_001978.2 + 27940 0.66 0.649157
Target:  5'- aGuCGAACGGGgcGUUGugGaucagGAACCGGg -3'
miRNA:   3'- gC-GCUUGCCU--CAGCugCgg---CUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 27174 0.69 0.479531
Target:  5'- gGCGAccCGGAGUCGAuuagcaccgcaaCGCgUGAguACCGGg -3'
miRNA:   3'- gCGCUu-GCCUCAGCU------------GCG-GCU--UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 26459 0.67 0.594909
Target:  5'- uCGCGAACGGcguGGUCGACcuUCGua-CGGg -3'
miRNA:   3'- -GCGCUUGCC---UCAGCUGc-GGCuugGCC- -5'
8094 3' -56.4 NC_001978.2 + 26077 0.72 0.296194
Target:  5'- uCGCGGACGG-GUCGA-GCCGAcuugaCGGc -3'
miRNA:   3'- -GCGCUUGCCuCAGCUgCGGCUug---GCC- -5'
8094 3' -56.4 NC_001978.2 + 25664 0.66 0.627437
Target:  5'- gGCGuguucCGGGGU-GACGCCGGuuaCGGc -3'
miRNA:   3'- gCGCuu---GCCUCAgCUGCGGCUug-GCC- -5'
8094 3' -56.4 NC_001978.2 + 25312 0.68 0.541414
Target:  5'- gGCcGACGGAGcugaCGACGUCGcccgugucacAACCGGc -3'
miRNA:   3'- gCGcUUGCCUCa---GCUGCGGC----------UUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 24817 0.73 0.268107
Target:  5'- uCGCGAACaGAGaucaugCGGCGCUGGggcuACCGGu -3'
miRNA:   3'- -GCGCUUGcCUCa-----GCUGCGGCU----UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 23515 0.75 0.212804
Target:  5'- gGCGAA-GGAGUaCGacGCGCCGAACCcGGc -3'
miRNA:   3'- gCGCUUgCCUCA-GC--UGCGGCUUGG-CC- -5'
8094 3' -56.4 NC_001978.2 + 22881 0.69 0.449905
Target:  5'- gCGCGGggacgGCGGcGUUGugGCCGuGCCa- -3'
miRNA:   3'- -GCGCU-----UGCCuCAGCugCGGCuUGGcc -5'
8094 3' -56.4 NC_001978.2 + 22332 0.71 0.376193
Target:  5'- gGCGu-CGGGuugccGUCGGCGUCGAGCCa- -3'
miRNA:   3'- gCGCuuGCCU-----CAGCUGCGGCUUGGcc -5'
8094 3' -56.4 NC_001978.2 + 22270 0.79 0.117467
Target:  5'- aCGCcGACGGcaaccCGACGCCGGACCGGu -3'
miRNA:   3'- -GCGcUUGCCuca--GCUGCGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 21778 0.66 0.648071
Target:  5'- gGUG-ACGuAGUgaugaagUGGCGUCGAGCCGGg -3'
miRNA:   3'- gCGCuUGCcUCA-------GCUGCGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 21553 0.72 0.303564
Target:  5'- aCGUcGGCGGAGUCGA-GCCcccACCGGg -3'
miRNA:   3'- -GCGcUUGCCUCAGCUgCGGcu-UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 20759 0.69 0.479531
Target:  5'- gCGCGAACgagGGAGUUGuGCGCCcccuGCCGc -3'
miRNA:   3'- -GCGCUUG---CCUCAGC-UGCGGcu--UGGCc -5'
8094 3' -56.4 NC_001978.2 + 20387 0.66 0.627437
Target:  5'- gGCGAAgGccgaagucGAGUCG-CGCCGGucgGCCGa -3'
miRNA:   3'- gCGCUUgC--------CUCAGCuGCGGCU---UGGCc -5'
8094 3' -56.4 NC_001978.2 + 20343 0.79 0.11112
Target:  5'- gCGCGAgagACGGAGcUGACGCCGGucaccCCGGa -3'
miRNA:   3'- -GCGCU---UGCCUCaGCUGCGGCUu----GGCC- -5'
8094 3' -56.4 NC_001978.2 + 19855 0.68 0.510081
Target:  5'- gGCGAcguGCGca-UUGGCGCCGuGCCGGg -3'
miRNA:   3'- gCGCU---UGCcucAGCUGCGGCuUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 19596 0.67 0.594909
Target:  5'- gGCGuGAUGuGGUCGGCGCCGGucagcuCCGu -3'
miRNA:   3'- gCGC-UUGCcUCAGCUGCGGCUu-----GGCc -5'
8094 3' -56.4 NC_001978.2 + 18532 0.68 0.499803
Target:  5'- cCGUGAAgGGAGUCGGCaacCUGAGCgGc -3'
miRNA:   3'- -GCGCUUgCCUCAGCUGc--GGCUUGgCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.