miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8094 3' -56.4 NC_001978.2 + 41350 0.71 0.342519
Target:  5'- uGCaAGCGGcuugauguGGUCGACGUCGAGCUGu -3'
miRNA:   3'- gCGcUUGCC--------UCAGCUGCGGCUUGGCc -5'
8094 3' -56.4 NC_001978.2 + 39638 0.68 0.541414
Target:  5'- uGCGGACGG-GUCGACcaCCuu-CCGGc -3'
miRNA:   3'- gCGCUUGCCuCAGCUGc-GGcuuGGCC- -5'
8094 3' -56.4 NC_001978.2 + 39403 0.66 0.627437
Target:  5'- gCGUGAuCGG-GUCG-CGCUGAAUgCGGu -3'
miRNA:   3'- -GCGCUuGCCuCAGCuGCGGCUUG-GCC- -5'
8094 3' -56.4 NC_001978.2 + 39153 0.67 0.552004
Target:  5'- aGCGcAUGGAcGcUGACGCCGuGCCGa -3'
miRNA:   3'- gCGCuUGCCU-CaGCUGCGGCuUGGCc -5'
8094 3' -56.4 NC_001978.2 + 38027 0.66 0.627437
Target:  5'- gCGCGcugccccaGGAcGaCGACGgCGAGCCGGu -3'
miRNA:   3'- -GCGCuug-----CCU-CaGCUGCgGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 36763 0.71 0.349903
Target:  5'- aCGUccuucCGGAGcCGACGCCGGagccugaGCCGGa -3'
miRNA:   3'- -GCGcuu--GCCUCaGCUGCGGCU-------UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 35985 0.67 0.605733
Target:  5'- gGCGAcacccCGGAGacUGcCGCCGAcCCGGg -3'
miRNA:   3'- gCGCUu----GCCUCa-GCuGCGGCUuGGCC- -5'
8094 3' -56.4 NC_001978.2 + 35845 0.69 0.466573
Target:  5'- aGUGAGCGGAcccuucgaaccggcGggaGugGUCGAGCUGGg -3'
miRNA:   3'- gCGCUUGCCU--------------Cag-CugCGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 34713 0.66 0.613323
Target:  5'- gGUGcAACGGggcucAGUCGGCGUCGGcucgaacccggcaaGCUGGg -3'
miRNA:   3'- gCGC-UUGCC-----UCAGCUGCGGCU--------------UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 33933 0.66 0.638299
Target:  5'- gGCGAccgGCGaaGAGaucaCGGCGCUucuGAACCGGg -3'
miRNA:   3'- gCGCU---UGC--CUCa---GCUGCGG---CUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 33781 0.68 0.499803
Target:  5'- cCGCGAAgcgugcUGGGcGcUCGACGUCGAACCu- -3'
miRNA:   3'- -GCGCUU------GCCU-C-AGCUGCGGCUUGGcc -5'
8094 3' -56.4 NC_001978.2 + 33554 0.69 0.469547
Target:  5'- uGCGggUGucgcccuuGUCGGCGCCGuGACCGu -3'
miRNA:   3'- gCGCuuGCcu------CAGCUGCGGC-UUGGCc -5'
8094 3' -56.4 NC_001978.2 + 32283 0.69 0.469547
Target:  5'- aGCGGACGGAcGUUcacGCGCCGuGCCu- -3'
miRNA:   3'- gCGCUUGCCU-CAGc--UGCGGCuUGGcc -5'
8094 3' -56.4 NC_001978.2 + 31605 0.69 0.45967
Target:  5'- aCGgGAAgcCGGAGUCaaGCGCCGuGCCGu -3'
miRNA:   3'- -GCgCUU--GCCUCAGc-UGCGGCuUGGCc -5'
8094 3' -56.4 NC_001978.2 + 30042 0.66 0.631782
Target:  5'- uCGCGcucAGCGGcaagccggucggcaaGGUCGuCGgCGGACUGGg -3'
miRNA:   3'- -GCGC---UUGCC---------------UCAGCuGCgGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 29142 0.67 0.605733
Target:  5'- uGUGuccgucACGG-GUCGGCGCCugccgcucGACCGGa -3'
miRNA:   3'- gCGCu-----UGCCuCAGCUGCGGc-------UUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 29028 0.7 0.421315
Target:  5'- aGCGAccgaaGCGGAGauugcccgugCGGuCGCCGAguaugACCGGg -3'
miRNA:   3'- gCGCU-----UGCCUCa---------GCU-GCGGCU-----UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 28991 0.73 0.254888
Target:  5'- aCGgGGGCGGAGUCGccACGauugcCCGAcagACCGGa -3'
miRNA:   3'- -GCgCUUGCCUCAGC--UGC-----GGCU---UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 28947 0.66 0.627437
Target:  5'- gCGCGAcCGGAagguGUUcaagGGCGCCGGAuUCGGc -3'
miRNA:   3'- -GCGCUuGCCU----CAG----CUGCGGCUU-GGCC- -5'
8094 3' -56.4 NC_001978.2 + 28384 0.71 0.345787
Target:  5'- gGCGAAgGGuGUCGACGUacucaagaucaagcgCGAGCCcGGc -3'
miRNA:   3'- gCGCUUgCCuCAGCUGCG---------------GCUUGG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.