miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8094 3' -56.4 NC_001978.2 + 13638 1.11 0.000546
Target:  5'- gCGCGAACGGAGUCGACGCCGAACCGGg -3'
miRNA:   3'- -GCGCUUGCCUCAGCUGCGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 20343 0.79 0.11112
Target:  5'- gCGCGAgagACGGAGcUGACGCCGGucaccCCGGa -3'
miRNA:   3'- -GCGCU---UGCCUCaGCUGCGGCUu----GGCC- -5'
8094 3' -56.4 NC_001978.2 + 22270 0.79 0.117467
Target:  5'- aCGCcGACGGcaaccCGACGCCGGACCGGu -3'
miRNA:   3'- -GCGcUUGCCuca--GCUGCGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 7174 0.75 0.201928
Target:  5'- gGCGAACuuGAGauugacguacUCGACGCCGgAGCCGGu -3'
miRNA:   3'- gCGCUUGc-CUC----------AGCUGCGGC-UUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 23515 0.75 0.212804
Target:  5'- gGCGAA-GGAGUaCGacGCGCCGAACCcGGc -3'
miRNA:   3'- gCGCUUgCCUCA-GC--UGCGGCUUGG-CC- -5'
8094 3' -56.4 NC_001978.2 + 17525 0.74 0.242209
Target:  5'- uGCGGGCGGcuccGUCucCGCCGAcCCGGa -3'
miRNA:   3'- gCGCUUGCCu---CAGcuGCGGCUuGGCC- -5'
8094 3' -56.4 NC_001978.2 + 28991 0.73 0.254888
Target:  5'- aCGgGGGCGGAGUCGccACGauugcCCGAcagACCGGa -3'
miRNA:   3'- -GCgCUUGCCUCAGC--UGC-----GGCU---UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 24817 0.73 0.268107
Target:  5'- uCGCGAACaGAGaucaugCGGCGCUGGggcuACCGGu -3'
miRNA:   3'- -GCGCUUGcCUCa-----GCUGCGGCU----UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 12457 0.73 0.274921
Target:  5'- gCGUGAACGuGGUCGACGCCu--UCGGc -3'
miRNA:   3'- -GCGCUUGCcUCAGCUGCGGcuuGGCC- -5'
8094 3' -56.4 NC_001978.2 + 11063 0.73 0.281873
Target:  5'- uCGCGAACGG-GUCGGCGUucgucugcacguUGAccgucacgccGCCGGa -3'
miRNA:   3'- -GCGCUUGCCuCAGCUGCG------------GCU----------UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 26077 0.72 0.296194
Target:  5'- uCGCGGACGG-GUCGA-GCCGAcuugaCGGc -3'
miRNA:   3'- -GCGCUUGCCuCAGCUgCGGCUug---GCC- -5'
8094 3' -56.4 NC_001978.2 + 21553 0.72 0.303564
Target:  5'- aCGUcGGCGGAGUCGA-GCCcccACCGGg -3'
miRNA:   3'- -GCGcUUGCCUCAGCUgCGGcu-UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 8601 0.72 0.311074
Target:  5'- gCGCGAAgcauCGGGGcaCGGCG-CGAACCGGc -3'
miRNA:   3'- -GCGCUU----GCCUCa-GCUGCgGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 4103 0.72 0.318725
Target:  5'- -cUGGGCGaAGUCGGCGaaGAGCCGGa -3'
miRNA:   3'- gcGCUUGCcUCAGCUGCggCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 41350 0.71 0.342519
Target:  5'- uGCaAGCGGcuugauguGGUCGACGUCGAGCUGu -3'
miRNA:   3'- gCGcUUGCC--------UCAGCUGCGGCUUGGCc -5'
8094 3' -56.4 NC_001978.2 + 28384 0.71 0.345787
Target:  5'- gGCGAAgGGuGUCGACGUacucaagaucaagcgCGAGCCcGGc -3'
miRNA:   3'- gCGCUUgCCuCAGCUGCG---------------GCUUGG-CC- -5'
8094 3' -56.4 NC_001978.2 + 36763 0.71 0.349903
Target:  5'- aCGUccuucCGGAGcCGACGCCGGagccugaGCCGGa -3'
miRNA:   3'- -GCGcuu--GCCUCaGCUGCGGCU-------UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 22332 0.71 0.376193
Target:  5'- gGCGu-CGGGuugccGUCGGCGUCGAGCCa- -3'
miRNA:   3'- gCGCuuGCCU-----CAGCUGCGGCUUGGcc -5'
8094 3' -56.4 NC_001978.2 + 3695 0.7 0.412031
Target:  5'- aCGCGGugcGCGuuGUCGACGCCGGAguuagCGGc -3'
miRNA:   3'- -GCGCU---UGCcuCAGCUGCGGCUUg----GCC- -5'
8094 3' -56.4 NC_001978.2 + 16319 0.7 0.415729
Target:  5'- uGCGGACGGAGUUGcccCGCuCGAcuccgcgaagcgccuGCCGa -3'
miRNA:   3'- gCGCUUGCCUCAGCu--GCG-GCU---------------UGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.