miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8094 3' -56.4 NC_001978.2 + 29028 0.7 0.421315
Target:  5'- aGCGAccgaaGCGGAGauugcccgugCGGuCGCCGAguaugACCGGg -3'
miRNA:   3'- gCGCU-----UGCCUCa---------GCU-GCGGCU-----UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 13196 0.69 0.449905
Target:  5'- aGCGuguCGGGGUCGgcaGCGUCGAGCgGc -3'
miRNA:   3'- gCGCuu-GCCUCAGC---UGCGGCUUGgCc -5'
8094 3' -56.4 NC_001978.2 + 22881 0.69 0.449905
Target:  5'- gCGCGGggacgGCGGcGUUGugGCCGuGCCa- -3'
miRNA:   3'- -GCGCU-----UGCCuCAGCugCGGCuUGGcc -5'
8094 3' -56.4 NC_001978.2 + 17860 0.69 0.449905
Target:  5'- aCGCGGcauaguUGGucguGUCGGCGUCGGACCa- -3'
miRNA:   3'- -GCGCUu-----GCCu---CAGCUGCGGCUUGGcc -5'
8094 3' -56.4 NC_001978.2 + 31605 0.69 0.45967
Target:  5'- aCGgGAAgcCGGAGUCaaGCGCCGuGCCGu -3'
miRNA:   3'- -GCgCUU--GCCUCAGc-UGCGGCuUGGCc -5'
8094 3' -56.4 NC_001978.2 + 35845 0.69 0.466573
Target:  5'- aGUGAGCGGAcccuucgaaccggcGggaGugGUCGAGCUGGg -3'
miRNA:   3'- gCGCUUGCCU--------------Cag-CugCGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 32283 0.69 0.469547
Target:  5'- aGCGGACGGAcGUUcacGCGCCGuGCCu- -3'
miRNA:   3'- gCGCUUGCCU-CAGc--UGCGGCuUGGcc -5'
8094 3' -56.4 NC_001978.2 + 13660 0.69 0.469547
Target:  5'- uCGCGccuAUGcGGUCGGCGCCGAcaaCGGc -3'
miRNA:   3'- -GCGCu--UGCcUCAGCUGCGGCUug-GCC- -5'
8094 3' -56.4 NC_001978.2 + 33554 0.69 0.469547
Target:  5'- uGCGggUGucgcccuuGUCGGCGCCGuGACCGu -3'
miRNA:   3'- gCGCuuGCcu------CAGCUGCGGC-UUGGCc -5'
8094 3' -56.4 NC_001978.2 + 27174 0.69 0.479531
Target:  5'- gGCGAccCGGAGUCGAuuagcaccgcaaCGCgUGAguACCGGg -3'
miRNA:   3'- gCGCUu-GCCUCAGCU------------GCG-GCU--UGGCC- -5'
8094 3' -56.4 NC_001978.2 + 20759 0.69 0.479531
Target:  5'- gCGCGAACgagGGAGUUGuGCGCCcccuGCCGc -3'
miRNA:   3'- -GCGCUUG---CCUCAGC-UGCGGcu--UGGCc -5'
8094 3' -56.4 NC_001978.2 + 16492 0.68 0.496738
Target:  5'- aCGUGAcgggcuucaacaucACGGAGcCGACGaCCGuaAACCGa -3'
miRNA:   3'- -GCGCU--------------UGCCUCaGCUGC-GGC--UUGGCc -5'
8094 3' -56.4 NC_001978.2 + 18532 0.68 0.499803
Target:  5'- cCGUGAAgGGAGUCGGCaacCUGAGCgGc -3'
miRNA:   3'- -GCGCUUgCCUCAGCUGc--GGCUUGgCc -5'
8094 3' -56.4 NC_001978.2 + 33781 0.68 0.499803
Target:  5'- cCGCGAAgcgugcUGGGcGcUCGACGUCGAACCu- -3'
miRNA:   3'- -GCGCUU------GCCU-C-AGCUGCGGCUUGGcc -5'
8094 3' -56.4 NC_001978.2 + 5615 0.68 0.510081
Target:  5'- gGCGAcccAUGGcGUcacCGAUgGCCGGACCGGc -3'
miRNA:   3'- gCGCU---UGCCuCA---GCUG-CGGCUUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 19855 0.68 0.510081
Target:  5'- gGCGAcguGCGca-UUGGCGCCGuGCCGGg -3'
miRNA:   3'- gCGCU---UGCcucAGCUGCGGCuUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 3071 0.68 0.510081
Target:  5'- gCGCGucauGCGGAGUgacCGucuCGCCGGaaGCCGc -3'
miRNA:   3'- -GCGCu---UGCCUCA---GCu--GCGGCU--UGGCc -5'
8094 3' -56.4 NC_001978.2 + 25312 0.68 0.541414
Target:  5'- gGCcGACGGAGcugaCGACGUCGcccgugucacAACCGGc -3'
miRNA:   3'- gCGcUUGCCUCa---GCUGCGGC----------UUGGCC- -5'
8094 3' -56.4 NC_001978.2 + 39638 0.68 0.541414
Target:  5'- uGCGGACGG-GUCGACcaCCuu-CCGGc -3'
miRNA:   3'- gCGCUUGCCuCAGCUGc-GGcuuGGCC- -5'
8094 3' -56.4 NC_001978.2 + 39153 0.67 0.552004
Target:  5'- aGCGcAUGGAcGcUGACGCCGuGCCGa -3'
miRNA:   3'- gCGCuUGCCU-CaGCUGCGGCuUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.