Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 13660 | 0.69 | 0.469547 |
Target: 5'- uCGCGccuAUGcGGUCGGCGCCGAcaaCGGc -3' miRNA: 3'- -GCGCu--UGCcUCAGCUGCGGCUug-GCC- -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 13947 | 0.66 | 0.616578 |
Target: 5'- uCGUGAuuACGGAGcgcUCGACGUCGuugaugagaacGGCaCGGa -3' miRNA: 3'- -GCGCU--UGCCUC---AGCUGCGGC-----------UUG-GCC- -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 16319 | 0.7 | 0.415729 |
Target: 5'- uGCGGACGGAGUUGcccCGCuCGAcuccgcgaagcgccuGCCGa -3' miRNA: 3'- gCGCUUGCCUCAGCu--GCG-GCU---------------UGGCc -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 16492 | 0.68 | 0.496738 |
Target: 5'- aCGUGAcgggcuucaacaucACGGAGcCGACGaCCGuaAACCGa -3' miRNA: 3'- -GCGCU--------------UGCCUCaGCUGC-GGC--UUGGCc -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 16693 | 0.66 | 0.659999 |
Target: 5'- uGCGGucaACGcauGUCGGCGCCGuuCCGc -3' miRNA: 3'- gCGCU---UGCcu-CAGCUGCGGCuuGGCc -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 17525 | 0.74 | 0.242209 |
Target: 5'- uGCGGGCGGcuccGUCucCGCCGAcCCGGa -3' miRNA: 3'- gCGCUUGCCu---CAGcuGCGGCUuGGCC- -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 17860 | 0.69 | 0.449905 |
Target: 5'- aCGCGGcauaguUGGucguGUCGGCGUCGGACCa- -3' miRNA: 3'- -GCGCUu-----GCCu---CAGCUGCGGCUUGGcc -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 18532 | 0.68 | 0.499803 |
Target: 5'- cCGUGAAgGGAGUCGGCaacCUGAGCgGc -3' miRNA: 3'- -GCGCUUgCCUCAGCUGc--GGCUUGgCc -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 19596 | 0.67 | 0.594909 |
Target: 5'- gGCGuGAUGuGGUCGGCGCCGGucagcuCCGu -3' miRNA: 3'- gCGC-UUGCcUCAGCUGCGGCUu-----GGCc -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 19855 | 0.68 | 0.510081 |
Target: 5'- gGCGAcguGCGca-UUGGCGCCGuGCCGGg -3' miRNA: 3'- gCGCU---UGCcucAGCUGCGGCuUGGCC- -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 20343 | 0.79 | 0.11112 |
Target: 5'- gCGCGAgagACGGAGcUGACGCCGGucaccCCGGa -3' miRNA: 3'- -GCGCU---UGCCUCaGCUGCGGCUu----GGCC- -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 20387 | 0.66 | 0.627437 |
Target: 5'- gGCGAAgGccgaagucGAGUCG-CGCCGGucgGCCGa -3' miRNA: 3'- gCGCUUgC--------CUCAGCuGCGGCU---UGGCc -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 20759 | 0.69 | 0.479531 |
Target: 5'- gCGCGAACgagGGAGUUGuGCGCCcccuGCCGc -3' miRNA: 3'- -GCGCUUG---CCUCAGC-UGCGGcu--UGGCc -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 21553 | 0.72 | 0.303564 |
Target: 5'- aCGUcGGCGGAGUCGA-GCCcccACCGGg -3' miRNA: 3'- -GCGcUUGCCUCAGCUgCGGcu-UGGCC- -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 21778 | 0.66 | 0.648071 |
Target: 5'- gGUG-ACGuAGUgaugaagUGGCGUCGAGCCGGg -3' miRNA: 3'- gCGCuUGCcUCA-------GCUGCGGCUUGGCC- -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 22270 | 0.79 | 0.117467 |
Target: 5'- aCGCcGACGGcaaccCGACGCCGGACCGGu -3' miRNA: 3'- -GCGcUUGCCuca--GCUGCGGCUUGGCC- -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 22332 | 0.71 | 0.376193 |
Target: 5'- gGCGu-CGGGuugccGUCGGCGUCGAGCCa- -3' miRNA: 3'- gCGCuuGCCU-----CAGCUGCGGCUUGGcc -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 22881 | 0.69 | 0.449905 |
Target: 5'- gCGCGGggacgGCGGcGUUGugGCCGuGCCa- -3' miRNA: 3'- -GCGCU-----UGCCuCAGCugCGGCuUGGcc -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 23515 | 0.75 | 0.212804 |
Target: 5'- gGCGAA-GGAGUaCGacGCGCCGAACCcGGc -3' miRNA: 3'- gCGCUUgCCUCA-GC--UGCGGCUUGG-CC- -5' |
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8094 | 3' | -56.4 | NC_001978.2 | + | 24817 | 0.73 | 0.268107 |
Target: 5'- uCGCGAACaGAGaucaugCGGCGCUGGggcuACCGGu -3' miRNA: 3'- -GCGCUUGcCUCa-----GCUGCGGCU----UGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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