Results 41 - 60 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 33554 | 0.69 | 0.469547 |
Target: 5'- uGCGggUGucgcccuuGUCGGCGCCGuGACCGu -3' miRNA: 3'- gCGCuuGCcu------CAGCUGCGGC-UUGGCc -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 35845 | 0.69 | 0.466573 |
Target: 5'- aGUGAGCGGAcccuucgaaccggcGggaGugGUCGAGCUGGg -3' miRNA: 3'- gCGCUUGCCU--------------Cag-CugCGGCUUGGCC- -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 31605 | 0.69 | 0.45967 |
Target: 5'- aCGgGAAgcCGGAGUCaaGCGCCGuGCCGu -3' miRNA: 3'- -GCgCUU--GCCUCAGc-UGCGGCuUGGCc -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 22881 | 0.69 | 0.449905 |
Target: 5'- gCGCGGggacgGCGGcGUUGugGCCGuGCCa- -3' miRNA: 3'- -GCGCU-----UGCCuCAGCugCGGCuUGGcc -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 13196 | 0.69 | 0.449905 |
Target: 5'- aGCGuguCGGGGUCGgcaGCGUCGAGCgGc -3' miRNA: 3'- gCGCuu-GCCUCAGC---UGCGGCUUGgCc -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 17860 | 0.69 | 0.449905 |
Target: 5'- aCGCGGcauaguUGGucguGUCGGCGUCGGACCa- -3' miRNA: 3'- -GCGCUu-----GCCu---CAGCUGCGGCUUGGcc -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 29028 | 0.7 | 0.421315 |
Target: 5'- aGCGAccgaaGCGGAGauugcccgugCGGuCGCCGAguaugACCGGg -3' miRNA: 3'- gCGCU-----UGCCUCa---------GCU-GCGGCU-----UGGCC- -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 16319 | 0.7 | 0.415729 |
Target: 5'- uGCGGACGGAGUUGcccCGCuCGAcuccgcgaagcgccuGCCGa -3' miRNA: 3'- gCGCUUGCCUCAGCu--GCG-GCU---------------UGGCc -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 3695 | 0.7 | 0.412031 |
Target: 5'- aCGCGGugcGCGuuGUCGACGCCGGAguuagCGGc -3' miRNA: 3'- -GCGCU---UGCcuCAGCUGCGGCUUg----GCC- -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 22332 | 0.71 | 0.376193 |
Target: 5'- gGCGu-CGGGuugccGUCGGCGUCGAGCCa- -3' miRNA: 3'- gCGCuuGCCU-----CAGCUGCGGCUUGGcc -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 36763 | 0.71 | 0.349903 |
Target: 5'- aCGUccuucCGGAGcCGACGCCGGagccugaGCCGGa -3' miRNA: 3'- -GCGcuu--GCCUCaGCUGCGGCU-------UGGCC- -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 28384 | 0.71 | 0.345787 |
Target: 5'- gGCGAAgGGuGUCGACGUacucaagaucaagcgCGAGCCcGGc -3' miRNA: 3'- gCGCUUgCCuCAGCUGCG---------------GCUUGG-CC- -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 41350 | 0.71 | 0.342519 |
Target: 5'- uGCaAGCGGcuugauguGGUCGACGUCGAGCUGu -3' miRNA: 3'- gCGcUUGCC--------UCAGCUGCGGCUUGGCc -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 4103 | 0.72 | 0.318725 |
Target: 5'- -cUGGGCGaAGUCGGCGaaGAGCCGGa -3' miRNA: 3'- gcGCUUGCcUCAGCUGCggCUUGGCC- -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 8601 | 0.72 | 0.311074 |
Target: 5'- gCGCGAAgcauCGGGGcaCGGCG-CGAACCGGc -3' miRNA: 3'- -GCGCUU----GCCUCa-GCUGCgGCUUGGCC- -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 21553 | 0.72 | 0.303564 |
Target: 5'- aCGUcGGCGGAGUCGA-GCCcccACCGGg -3' miRNA: 3'- -GCGcUUGCCUCAGCUgCGGcu-UGGCC- -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 26077 | 0.72 | 0.296194 |
Target: 5'- uCGCGGACGG-GUCGA-GCCGAcuugaCGGc -3' miRNA: 3'- -GCGCUUGCCuCAGCUgCGGCUug---GCC- -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 11063 | 0.73 | 0.281873 |
Target: 5'- uCGCGAACGG-GUCGGCGUucgucugcacguUGAccgucacgccGCCGGa -3' miRNA: 3'- -GCGCUUGCCuCAGCUGCG------------GCU----------UGGCC- -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 12457 | 0.73 | 0.274921 |
Target: 5'- gCGUGAACGuGGUCGACGCCu--UCGGc -3' miRNA: 3'- -GCGCUUGCcUCAGCUGCGGcuuGGCC- -5' |
|||||||
8094 | 3' | -56.4 | NC_001978.2 | + | 24817 | 0.73 | 0.268107 |
Target: 5'- uCGCGAACaGAGaucaugCGGCGCUGGggcuACCGGu -3' miRNA: 3'- -GCGCUUGcCUCa-----GCUGCGGCU----UGGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home