miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8095 3' -56.3 NC_001978.2 + 36006 0.66 0.564101
Target:  5'- uACUcaGGCGAGCCGCCuucaGCgaucaagGGCGUCu -3'
miRNA:   3'- -UGGcgUCGUUCGGCGG----CGaa-----UUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 41245 0.66 0.564101
Target:  5'- cGCCGCAGCGuuguucccacgGGCgauagcagcaCGCCGCUUcGCa-- -3'
miRNA:   3'- -UGGCGUCGU-----------UCG----------GCGGCGAAuUGcag -5'
8095 3' -56.3 NC_001978.2 + 12485 0.66 0.564101
Target:  5'- gACUggGCGGCAGuGCUGCCGUcuc-CGUCg -3'
miRNA:   3'- -UGG--CGUCGUU-CGGCGGCGaauuGCAG- -5'
8095 3' -56.3 NC_001978.2 + 8291 0.66 0.56299
Target:  5'- uACgGCAcGCGAGCCGCUGagccugcCUUGAUGa- -3'
miRNA:   3'- -UGgCGU-CGUUCGGCGGC-------GAAUUGCag -5'
8095 3' -56.3 NC_001978.2 + 24316 0.66 0.553015
Target:  5'- uGCCGgGGCuuGUCGUCGUUcAGCGUa -3'
miRNA:   3'- -UGGCgUCGuuCGGCGGCGAaUUGCAg -5'
8095 3' -56.3 NC_001978.2 + 38045 0.66 0.553015
Target:  5'- -aCGaCGGCGAGCCGgugaCGCUcgaaUGGCGUUc -3'
miRNA:   3'- ugGC-GUCGUUCGGCg---GCGA----AUUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 35400 0.66 0.541995
Target:  5'- uCCGCAacgaucacGCAAcaagcGCCGUCGCUgggugGACGUa -3'
miRNA:   3'- uGGCGU--------CGUU-----CGGCGGCGAa----UUGCAg -5'
8095 3' -56.3 NC_001978.2 + 13715 0.66 0.541995
Target:  5'- gACCGCAuaggcGCGAGUCGCCauugccGCUga--GUCg -3'
miRNA:   3'- -UGGCGU-----CGUUCGGCGG------CGAauugCAG- -5'
8095 3' -56.3 NC_001978.2 + 39797 0.66 0.520184
Target:  5'- cGCCuCAGUGAGCuUGCCGa--AGCGUCg -3'
miRNA:   3'- -UGGcGUCGUUCG-GCGGCgaaUUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 27687 0.66 0.520184
Target:  5'- gACCGUAaUGAcGUCGCCGCg-AACGUCg -3'
miRNA:   3'- -UGGCGUcGUU-CGGCGGCGaaUUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 30720 0.66 0.520184
Target:  5'- gACCGuCAGCAcgucuucaAG-CGCCGC--AACGUCc -3'
miRNA:   3'- -UGGC-GUCGU--------UCgGCGGCGaaUUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 11999 0.66 0.519103
Target:  5'- -aCGuCAGCGaagccgaAGCCGCCGUguauuCGUCu -3'
miRNA:   3'- ugGC-GUCGU-------UCGGCGGCGaauu-GCAG- -5'
8095 3' -56.3 NC_001978.2 + 1685 0.66 0.509408
Target:  5'- cCCGaAGCuuGCCGCCGUgugcGACGUUc -3'
miRNA:   3'- uGGCgUCGuuCGGCGGCGaa--UUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 31060 0.67 0.488146
Target:  5'- uGCCGCuguGCucgAAGCCGCUGCcgcugAGCGa- -3'
miRNA:   3'- -UGGCGu--CG---UUCGGCGGCGaa---UUGCag -5'
8095 3' -56.3 NC_001978.2 + 12117 0.67 0.477672
Target:  5'- -gUGCcGgAAGCCGCCGCgcgccgUAGCGaUCa -3'
miRNA:   3'- ugGCGuCgUUCGGCGGCGa-----AUUGC-AG- -5'
8095 3' -56.3 NC_001978.2 + 15129 0.67 0.46731
Target:  5'- cGCCGCAGCuccGCCacuucaGCCGCaacccGGCGUUc -3'
miRNA:   3'- -UGGCGUCGuu-CGG------CGGCGaa---UUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 39995 0.67 0.457065
Target:  5'- gGCgGCuucaaguucGGCAAGCCGCUcuuccgccccuuGCUgccggAGCGUCa -3'
miRNA:   3'- -UGgCG---------UCGUUCGGCGG------------CGAa----UUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 38137 0.68 0.436945
Target:  5'- cGCaCGgGGCGAGCCGCUG----ACGUCc -3'
miRNA:   3'- -UG-GCgUCGUUCGGCGGCgaauUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 10107 0.68 0.427078
Target:  5'- cGCCGguaaGGCAguGGUCGCCuGggUGACGUCa -3'
miRNA:   3'- -UGGCg---UCGU--UCGGCGG-CgaAUUGCAG- -5'
8095 3' -56.3 NC_001978.2 + 31412 0.68 0.398288
Target:  5'- -gUGCGGCAGGCaaGCCGCUUGAUc-- -3'
miRNA:   3'- ugGCGUCGUUCGg-CGGCGAAUUGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.