Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8095 | 3' | -56.3 | NC_001978.2 | + | 41245 | 0.66 | 0.564101 |
Target: 5'- cGCCGCAGCGuuguucccacgGGCgauagcagcaCGCCGCUUcGCa-- -3' miRNA: 3'- -UGGCGUCGU-----------UCG----------GCGGCGAAuUGcag -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 39995 | 0.67 | 0.457065 |
Target: 5'- gGCgGCuucaaguucGGCAAGCCGCUcuuccgccccuuGCUgccggAGCGUCa -3' miRNA: 3'- -UGgCG---------UCGUUCGGCGG------------CGAa----UUGCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 39797 | 0.66 | 0.520184 |
Target: 5'- cGCCuCAGUGAGCuUGCCGa--AGCGUCg -3' miRNA: 3'- -UGGcGUCGUUCG-GCGGCgaaUUGCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 38137 | 0.68 | 0.436945 |
Target: 5'- cGCaCGgGGCGAGCCGCUG----ACGUCc -3' miRNA: 3'- -UG-GCgUCGUUCGGCGGCgaauUGCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 38045 | 0.66 | 0.553015 |
Target: 5'- -aCGaCGGCGAGCCGgugaCGCUcgaaUGGCGUUc -3' miRNA: 3'- ugGC-GUCGUUCGGCg---GCGA----AUUGCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 36006 | 0.66 | 0.564101 |
Target: 5'- uACUcaGGCGAGCCGCCuucaGCgaucaagGGCGUCu -3' miRNA: 3'- -UGGcgUCGUUCGGCGG----CGaa-----UUGCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 35400 | 0.66 | 0.541995 |
Target: 5'- uCCGCAacgaucacGCAAcaagcGCCGUCGCUgggugGACGUa -3' miRNA: 3'- uGGCGU--------CGUU-----CGGCGGCGAa----UUGCAg -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 31866 | 0.69 | 0.361895 |
Target: 5'- uGCCGaC-GCGAGCCGCCcaGUcgggAACGUCg -3' miRNA: 3'- -UGGC-GuCGUUCGGCGG--CGaa--UUGCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 31412 | 0.68 | 0.398288 |
Target: 5'- -gUGCGGCAGGCaaGCCGCUUGAUc-- -3' miRNA: 3'- ugGCGUCGUUCGg-CGGCGAAUUGcag -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 31060 | 0.67 | 0.488146 |
Target: 5'- uGCCGCuguGCucgAAGCCGCUGCcgcugAGCGa- -3' miRNA: 3'- -UGGCGu--CG---UUCGGCGGCGaa---UUGCag -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 30722 | 0.69 | 0.370774 |
Target: 5'- uGCCGUccuuCAcGCCGCCGUgucGACGUCg -3' miRNA: 3'- -UGGCGuc--GUuCGGCGGCGaa-UUGCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 30720 | 0.66 | 0.520184 |
Target: 5'- gACCGuCAGCAcgucuucaAG-CGCCGC--AACGUCc -3' miRNA: 3'- -UGGC-GUCGU--------UCgGCGGCGaaUUGCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 27687 | 0.66 | 0.520184 |
Target: 5'- gACCGUAaUGAcGUCGCCGCg-AACGUCg -3' miRNA: 3'- -UGGCGUcGUU-CGGCGGCGaaUUGCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 24316 | 0.66 | 0.553015 |
Target: 5'- uGCCGgGGCuuGUCGUCGUUcAGCGUa -3' miRNA: 3'- -UGGCgUCGuuCGGCGGCGAaUUGCAg -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 21924 | 0.69 | 0.370774 |
Target: 5'- cCCGUGGCAAGCCaagauggcaGCgaCGCUU-GCGUCg -3' miRNA: 3'- uGGCGUCGUUCGG---------CG--GCGAAuUGCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 18765 | 0.7 | 0.303958 |
Target: 5'- gACCGCAuucacgagugucGCGAGCCggguuuguacGCCGUacGACGUCg -3' miRNA: 3'- -UGGCGU------------CGUUCGG----------CGGCGaaUUGCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 15705 | 0.69 | 0.388972 |
Target: 5'- aGCCcCAGCgAAGCCGCCGg--AACcGUCg -3' miRNA: 3'- -UGGcGUCG-UUCGGCGGCgaaUUG-CAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 15129 | 0.67 | 0.46731 |
Target: 5'- cGCCGCAGCuccGCCacuucaGCCGCaacccGGCGUUc -3' miRNA: 3'- -UGGCGUCGuu-CGG------CGGCGaa---UUGCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 14152 | 0.95 | 0.005215 |
Target: 5'- gACCGCAGCAAGCCGCCGCUUcaaGUCg -3' miRNA: 3'- -UGGCGUCGUUCGGCGGCGAAuugCAG- -5' |
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8095 | 3' | -56.3 | NC_001978.2 | + | 13869 | 0.71 | 0.274182 |
Target: 5'- -gUGCGGCuccGGCCGUCGCUaUGGCGUa -3' miRNA: 3'- ugGCGUCGu--UCGGCGGCGA-AUUGCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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