miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8099 3' -53.6 NC_001978.2 + 32974 0.66 0.758692
Target:  5'- cGCcGAAGCGCuucaGGcguaCGACGCug-GGGUg -3'
miRNA:   3'- -CGaCUUCGUG----CCa---GCUGCGuuaCCCG- -5'
8099 3' -53.6 NC_001978.2 + 8809 0.66 0.748067
Target:  5'- --cGAAGCGCgccGGUCgGGgGCGAagcggGGGCa -3'
miRNA:   3'- cgaCUUCGUG---CCAG-CUgCGUUa----CCCG- -5'
8099 3' -53.6 NC_001978.2 + 32171 0.66 0.744854
Target:  5'- cCUGAgccggggucaucacGGCACGGUCGGC-CGGaacGGCa -3'
miRNA:   3'- cGACU--------------UCGUGCCAGCUGcGUUac-CCG- -5'
8099 3' -53.6 NC_001978.2 + 33483 0.66 0.737317
Target:  5'- --gGAAGCAUGG-CG-CGCGAaGGuGCg -3'
miRNA:   3'- cgaCUUCGUGCCaGCuGCGUUaCC-CG- -5'
8099 3' -53.6 NC_001978.2 + 38510 0.66 0.726454
Target:  5'- gGCcGAccuucAGCGCGaaGUCGAgCGCGAcggGGGCc -3'
miRNA:   3'- -CGaCU-----UCGUGC--CAGCU-GCGUUa--CCCG- -5'
8099 3' -53.6 NC_001978.2 + 33716 0.66 0.726454
Target:  5'- gGCUGAAGCGucGUCGucuUGCcguuguacAUGGGCa -3'
miRNA:   3'- -CGACUUCGUgcCAGCu--GCGu-------UACCCG- -5'
8099 3' -53.6 NC_001978.2 + 41032 0.66 0.72427
Target:  5'- gGCUG-GGCGCGGcagcgcuagaagCGAcCGCccgucaugaAGUGGGCa -3'
miRNA:   3'- -CGACuUCGUGCCa-----------GCU-GCG---------UUACCCG- -5'
8099 3' -53.6 NC_001978.2 + 22582 0.66 0.704444
Target:  5'- aGCcgGucGCACGGaaGGCGUcg-GGGCg -3'
miRNA:   3'- -CGa-CuuCGUGCCagCUGCGuuaCCCG- -5'
8099 3' -53.6 NC_001978.2 + 24959 0.66 0.704444
Target:  5'- cCUGAgcaagGGCGCGaa-GACGCuugccgAAUGGGCg -3'
miRNA:   3'- cGACU-----UCGUGCcagCUGCG------UUACCCG- -5'
8099 3' -53.6 NC_001978.2 + 5993 0.66 0.701114
Target:  5'- cCUucAGCGCGccgacggucuucuuGUCGACGCccgGGGCg -3'
miRNA:   3'- cGAcuUCGUGC--------------CAGCUGCGuuaCCCG- -5'
8099 3' -53.6 NC_001978.2 + 38564 0.67 0.694436
Target:  5'- cGCUGAAGguCGGccgccuugucuucgUUGGCGCuacgcugugucgcUGGGCu -3'
miRNA:   3'- -CGACUUCguGCC--------------AGCUGCGuu-----------ACCCG- -5'
8099 3' -53.6 NC_001978.2 + 10578 0.67 0.693321
Target:  5'- aCUGAA-CGCGGUCGucaauuuCGUGAagGGGCu -3'
miRNA:   3'- cGACUUcGUGCCAGCu------GCGUUa-CCCG- -5'
8099 3' -53.6 NC_001978.2 + 27139 0.67 0.682135
Target:  5'- uGCgc-GGUGCGGUCGAgugguaUGCGAauggccUGGGCg -3'
miRNA:   3'- -CGacuUCGUGCCAGCU------GCGUU------ACCCG- -5'
8099 3' -53.6 NC_001978.2 + 9037 0.67 0.679891
Target:  5'- cGCUGAGGCGCuugagcgggaagccGGgaaCGACGUccuugccgcccaguUGGGCg -3'
miRNA:   3'- -CGACUUCGUG--------------CCa--GCUGCGuu------------ACCCG- -5'
8099 3' -53.6 NC_001978.2 + 511 0.67 0.670898
Target:  5'- cCUGAAGCGC-GUauGCGCc-UGGGCa -3'
miRNA:   3'- cGACUUCGUGcCAgcUGCGuuACCCG- -5'
8099 3' -53.6 NC_001978.2 + 30034 0.67 0.659623
Target:  5'- aGCgGcAAGC-CGGUCGGCaaggucgucgGCGGacUGGGCg -3'
miRNA:   3'- -CGaC-UUCGuGCCAGCUG----------CGUU--ACCCG- -5'
8099 3' -53.6 NC_001978.2 + 9777 0.67 0.657364
Target:  5'- uGCUGAAGCucgacccgucguCGGccguugaGACGC--UGGGCa -3'
miRNA:   3'- -CGACUUCGu-----------GCCag-----CUGCGuuACCCG- -5'
8099 3' -53.6 NC_001978.2 + 13202 0.67 0.648321
Target:  5'- gGCUGAAGCgugucGgGGUCGGCaGCGucgaGcGGCa -3'
miRNA:   3'- -CGACUUCG-----UgCCAGCUG-CGUua--C-CCG- -5'
8099 3' -53.6 NC_001978.2 + 32327 0.68 0.601935
Target:  5'- cGCUG-GGCGucgugaccCGGUCGACGUugagcgcuucgcgAAUGGcGCg -3'
miRNA:   3'- -CGACuUCGU--------GCCAGCUGCG-------------UUACC-CG- -5'
8099 3' -53.6 NC_001978.2 + 27763 0.69 0.580553
Target:  5'- aGCUGc-GCACGGUucaguucggcaCGGCGCAugaagccUGGGUc -3'
miRNA:   3'- -CGACuuCGUGCCA-----------GCUGCGUu------ACCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.