miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8099 5' -53.1 NC_001978.2 + 524 0.67 0.683898
Target:  5'- uGCGCCugGGCAU-CGUUG-CCGCugaAGCc -3'
miRNA:   3'- -CGCGG--CUGUAcGCAACuGGCGua-UCG- -5'
8099 5' -53.1 NC_001978.2 + 2652 0.67 0.683898
Target:  5'- uGUGCCGACccaacgccGgGUUG-CCGuCGUGGCu -3'
miRNA:   3'- -CGCGGCUGua------CgCAACuGGC-GUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 3086 0.67 0.680522
Target:  5'- cUGCCGACAccugaagcgcgucaUGCGgagUGACCGUcucGCc -3'
miRNA:   3'- cGCGGCUGU--------------ACGCa--ACUGGCGuauCG- -5'
8099 5' -53.1 NC_001978.2 + 9295 0.67 0.669239
Target:  5'- uGgGCCGACGucgaaUGcCGUUGggcagaugcucaaaACCGgCAUGGCg -3'
miRNA:   3'- -CgCGGCUGU-----AC-GCAAC--------------UGGC-GUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 32435 0.68 0.649978
Target:  5'- uGCGCCcuucCAUGCGUcGAgCCGUucGGCg -3'
miRNA:   3'- -CGCGGcu--GUACGCAaCU-GGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 31343 0.68 0.649978
Target:  5'- uCGCCG-UcgGCGUUGGCCGUg---- -3'
miRNA:   3'- cGCGGCuGuaCGCAACUGGCGuaucg -5'
8099 5' -53.1 NC_001978.2 + 29974 0.68 0.649978
Target:  5'- uUGCCGACcgGC-UUG-CCGCugAGCg -3'
miRNA:   3'- cGCGGCUGuaCGcAACuGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 10887 0.68 0.649978
Target:  5'- cGgGUgGACccGUGUUGGCgaGCGUGGCc -3'
miRNA:   3'- -CgCGgCUGuaCGCAACUGg-CGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 29440 0.68 0.627258
Target:  5'- gGCGCCGACGUGU---GACCcucCGUGGa -3'
miRNA:   3'- -CGCGGCUGUACGcaaCUGGc--GUAUCg -5'
8099 5' -53.1 NC_001978.2 + 13579 0.68 0.627258
Target:  5'- gGCGUCGACuccguucGCGcUGA-CGCAUGGUg -3'
miRNA:   3'- -CGCGGCUGua-----CGCaACUgGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 22194 0.69 0.604556
Target:  5'- cGCGCCGAagaugugGCGUggucgGACaCGUAcGGCu -3'
miRNA:   3'- -CGCGGCUgua----CGCAa----CUG-GCGUaUCG- -5'
8099 5' -53.1 NC_001978.2 + 19373 0.69 0.593238
Target:  5'- aCGCCGACGUGaCGUgcaagcgGugCGCGaAGa -3'
miRNA:   3'- cGCGGCUGUAC-GCAa------CugGCGUaUCg -5'
8099 5' -53.1 NC_001978.2 + 30790 0.69 0.581955
Target:  5'- aCGUCGACAcggcgGCGUgaagGACgGCAagGGCg -3'
miRNA:   3'- cGCGGCUGUa----CGCAa---CUGgCGUa-UCG- -5'
8099 5' -53.1 NC_001978.2 + 38576 0.69 0.581955
Target:  5'- aGCGCCgGGCAcgucgGCGUucggGACgGCGgAGCg -3'
miRNA:   3'- -CGCGG-CUGUa----CGCAa---CUGgCGUaUCG- -5'
8099 5' -53.1 NC_001978.2 + 21504 0.69 0.570716
Target:  5'- cCGCCGACGUGCaccccGugCGCugaGGCu -3'
miRNA:   3'- cGCGGCUGUACGcaa--CugGCGua-UCG- -5'
8099 5' -53.1 NC_001978.2 + 30372 0.69 0.55953
Target:  5'- cGCGCCGAagccGCcc-GGCuCGCGUGGCa -3'
miRNA:   3'- -CGCGGCUgua-CGcaaCUG-GCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 13732 0.69 0.55953
Target:  5'- uUGCCGuugUcgGCGccGACCGCAUAGg -3'
miRNA:   3'- cGCGGCu--GuaCGCaaCUGGCGUAUCg -5'
8099 5' -53.1 NC_001978.2 + 36142 0.7 0.526379
Target:  5'- gGUGUCGGCggGUGagUGGcCCGUGUAGCa -3'
miRNA:   3'- -CGCGGCUGuaCGCa-ACU-GGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 10952 0.7 0.515489
Target:  5'- -gGCCGAacCAUGCGUUGucggguuCCGC--GGCg -3'
miRNA:   3'- cgCGGCU--GUACGCAACu------GGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 21976 0.7 0.515489
Target:  5'- uUGCCGACAUggcaGCGcgcGACCGCGaaGGCg -3'
miRNA:   3'- cGCGGCUGUA----CGCaa-CUGGCGUa-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.