miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8099 5' -53.1 NC_001978.2 + 18367 0.66 0.73921
Target:  5'- cGCGgCG-CGUGCGUaGuuGCCGCccGGCu -3'
miRNA:   3'- -CGCgGCuGUACGCAaC--UGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 18888 0.66 0.781464
Target:  5'- aGCGUCGAUA-GCGggGaacGCCGCGc-GCa -3'
miRNA:   3'- -CGCGGCUGUaCGCaaC---UGGCGUauCG- -5'
8099 5' -53.1 NC_001978.2 + 19373 0.69 0.593238
Target:  5'- aCGCCGACGUGaCGUgcaagcgGugCGCGaAGa -3'
miRNA:   3'- cGCGGCUGUAC-GCAa------CugGCGUaUCg -5'
8099 5' -53.1 NC_001978.2 + 20388 0.74 0.331634
Target:  5'- cGCGCCGuGCggGCuuccUUGACCGUcgAGCg -3'
miRNA:   3'- -CGCGGC-UGuaCGc---AACUGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 20668 0.66 0.771117
Target:  5'- uUGCCGACGacgaCGUUGAgCgGCAgggGGCg -3'
miRNA:   3'- cGCGGCUGUac--GCAACU-GgCGUa--UCG- -5'
8099 5' -53.1 NC_001978.2 + 21504 0.69 0.570716
Target:  5'- cCGCCGACGUGCaccccGugCGCugaGGCu -3'
miRNA:   3'- cGCGGCUGUACGcaa--CugGCGua-UCG- -5'
8099 5' -53.1 NC_001978.2 + 21976 0.7 0.515489
Target:  5'- uUGCCGACAUggcaGCGcgcGACCGCGaaGGCg -3'
miRNA:   3'- cGCGGCUGUA----CGCaa-CUGGCGUa-UCG- -5'
8099 5' -53.1 NC_001978.2 + 22194 0.69 0.604556
Target:  5'- cGCGCCGAagaugugGCGUggucgGACaCGUAcGGCu -3'
miRNA:   3'- -CGCGGCUgua----CGCAa----CUG-GCGUaUCG- -5'
8099 5' -53.1 NC_001978.2 + 23917 0.66 0.749978
Target:  5'- gGCGUCGuCAgaaGCG--GugCGCAUGGUg -3'
miRNA:   3'- -CGCGGCuGUa--CGCaaCugGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 24086 0.67 0.714028
Target:  5'- uCGCCGACGUacagggcuucacccGCGUagucagUGACCGUuccGCg -3'
miRNA:   3'- cGCGGCUGUA--------------CGCA------ACUGGCGuauCG- -5'
8099 5' -53.1 NC_001978.2 + 24159 0.74 0.323392
Target:  5'- -aGCCGACcgGCGUUGAcuCCGguUacGGCc -3'
miRNA:   3'- cgCGGCUGuaCGCAACU--GGCguA--UCG- -5'
8099 5' -53.1 NC_001978.2 + 24597 0.67 0.695115
Target:  5'- uGUGUCGGCGUGC-UUGcccuugccauuACCGCAaUGGUg -3'
miRNA:   3'- -CGCGGCUGUACGcAAC-----------UGGCGU-AUCG- -5'
8099 5' -53.1 NC_001978.2 + 28106 0.66 0.73921
Target:  5'- gGCGCCGACGggucGaCGUaGAaCGCAcugAGCg -3'
miRNA:   3'- -CGCGGCUGUa---C-GCAaCUgGCGUa--UCG- -5'
8099 5' -53.1 NC_001978.2 + 29094 0.66 0.73921
Target:  5'- gGCGUCGuc--GCGUUGGCaGCGUgaAGCg -3'
miRNA:   3'- -CGCGGCuguaCGCAACUGgCGUA--UCG- -5'
8099 5' -53.1 NC_001978.2 + 29440 0.68 0.627258
Target:  5'- gGCGCCGACGUGU---GACCcucCGUGGa -3'
miRNA:   3'- -CGCGGCUGUACGcaaCUGGc--GUAUCg -5'
8099 5' -53.1 NC_001978.2 + 29974 0.68 0.649978
Target:  5'- uUGCCGACcgGC-UUG-CCGCugAGCg -3'
miRNA:   3'- cGCGGCUGuaCGcAACuGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 30011 0.66 0.781464
Target:  5'- aGCGaCCGACucacGCGUUGucgcccuugcCCGUAaGGCg -3'
miRNA:   3'- -CGC-GGCUGua--CGCAACu---------GGCGUaUCG- -5'
8099 5' -53.1 NC_001978.2 + 30085 0.67 0.710707
Target:  5'- uUGCCGACuggGCgGacgaauucacccaggUUGGCCGUGUGGCc -3'
miRNA:   3'- cGCGGCUGua-CG-C---------------AACUGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 30372 0.69 0.55953
Target:  5'- cGCGCCGAagccGCcc-GGCuCGCGUGGCa -3'
miRNA:   3'- -CGCGGCUgua-CGcaaCUG-GCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 30766 0.74 0.314504
Target:  5'- uUGCCGACgaccuucGUGaCGUUcgugacGACCGCAUGGCc -3'
miRNA:   3'- cGCGGCUG-------UAC-GCAA------CUGGCGUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.