miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8099 5' -53.1 NC_001978.2 + 524 0.67 0.683898
Target:  5'- uGCGCCugGGCAU-CGUUG-CCGCugaAGCc -3'
miRNA:   3'- -CGCGG--CUGUAcGCAACuGGCGua-UCG- -5'
8099 5' -53.1 NC_001978.2 + 1032 0.72 0.393577
Target:  5'- cCGCCGAgAaGCGc-GACCGCAUgaAGCg -3'
miRNA:   3'- cGCGGCUgUaCGCaaCUGGCGUA--UCG- -5'
8099 5' -53.1 NC_001978.2 + 1492 0.71 0.462547
Target:  5'- gGCGCCGgaaGCAUcggaccGuUGUUGugUGCGUGGCg -3'
miRNA:   3'- -CGCGGC---UGUA------C-GCAACugGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 2167 0.83 0.082398
Target:  5'- uGCGUCGACAUG-GUUG-CCGCAUGGUc -3'
miRNA:   3'- -CGCGGCUGUACgCAACuGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 2652 0.67 0.683898
Target:  5'- uGUGCCGACccaacgccGgGUUG-CCGuCGUGGCu -3'
miRNA:   3'- -CGCGGCUGua------CgCAACuGGC-GUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 3086 0.67 0.680522
Target:  5'- cUGCCGACAccugaagcgcgucaUGCGgagUGACCGUcucGCc -3'
miRNA:   3'- cGCGGCUGU--------------ACGCa--ACUGGCGuauCG- -5'
8099 5' -53.1 NC_001978.2 + 3633 0.77 0.195253
Target:  5'- gGCGUCGACAacGCGc--ACCGCGUAGCg -3'
miRNA:   3'- -CGCGGCUGUa-CGCaacUGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 4921 0.66 0.749978
Target:  5'- gGCGCgCGAgCGUGCG---ACCGCugAGCu -3'
miRNA:   3'- -CGCG-GCU-GUACGCaacUGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 5869 0.67 0.718445
Target:  5'- gGCGCCGACGguaagaGCGgacugccacagguacUGACCGUuc-GCg -3'
miRNA:   3'- -CGCGGCUGUa-----CGCa--------------ACUGGCGuauCG- -5'
8099 5' -53.1 NC_001978.2 + 7517 0.72 0.393577
Target:  5'- -aGCCGGaGUGC-UUGugUGCGUGGCg -3'
miRNA:   3'- cgCGGCUgUACGcAACugGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 9295 0.67 0.669239
Target:  5'- uGgGCCGACGucgaaUGcCGUUGggcagaugcucaaaACCGgCAUGGCg -3'
miRNA:   3'- -CgCGGCUGU-----AC-GCAAC--------------UGGC-GUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 10736 0.66 0.771117
Target:  5'- cCGCUGugGgGCGU--GCCGCGaagGGCg -3'
miRNA:   3'- cGCGGCugUaCGCAacUGGCGUa--UCG- -5'
8099 5' -53.1 NC_001978.2 + 10887 0.68 0.649978
Target:  5'- cGgGUgGACccGUGUUGGCgaGCGUGGCc -3'
miRNA:   3'- -CgCGgCUGuaCGCAACUGg-CGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 10952 0.7 0.515489
Target:  5'- -gGCCGAacCAUGCGUUGucggguuCCGC--GGCg -3'
miRNA:   3'- cgCGGCU--GUACGCAACu------GGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 12388 0.67 0.688392
Target:  5'- uGUGCCGAag-GCGUcgaccacguucacgcUGACCGUGU-GCc -3'
miRNA:   3'- -CGCGGCUguaCGCA---------------ACUGGCGUAuCG- -5'
8099 5' -53.1 NC_001978.2 + 12839 0.73 0.357278
Target:  5'- aCGUCGGCGggugGCGUcGGCCGUAUcGCg -3'
miRNA:   3'- cGCGGCUGUa---CGCAaCUGGCGUAuCG- -5'
8099 5' -53.1 NC_001978.2 + 13579 0.68 0.627258
Target:  5'- gGCGUCGACuccguucGCGcUGA-CGCAUGGUg -3'
miRNA:   3'- -CGCGGCUGua-----CGCaACUgGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 13732 0.69 0.55953
Target:  5'- uUGCCGuugUcgGCGccGACCGCAUAGg -3'
miRNA:   3'- cGCGGCu--GuaCGCaaCUGGCGUAUCg -5'
8099 5' -53.1 NC_001978.2 + 15511 0.67 0.695115
Target:  5'- aCGCCGACGUaCGUUG-CCGUcccgGGUc -3'
miRNA:   3'- cGCGGCUGUAcGCAACuGGCGua--UCG- -5'
8099 5' -53.1 NC_001978.2 + 16755 1.15 0.000479
Target:  5'- gGCGCCGACAUGCGUUGACCGCAUAGCg -3'
miRNA:   3'- -CGCGGCUGUACGCAACUGGCGUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.