miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8099 5' -53.1 NC_001978.2 + 16755 1.15 0.000479
Target:  5'- gGCGCCGACAUGCGUUGACCGCAUAGCg -3'
miRNA:   3'- -CGCGGCUGUACGCAACUGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 2167 0.83 0.082398
Target:  5'- uGCGUCGACAUG-GUUG-CCGCAUGGUc -3'
miRNA:   3'- -CGCGGCUGUACgCAACuGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 3633 0.77 0.195253
Target:  5'- gGCGUCGACAacGCGc--ACCGCGUAGCg -3'
miRNA:   3'- -CGCGGCUGUa-CGCaacUGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 36004 0.75 0.277163
Target:  5'- cCGCCGACccggGCGUUGugUGCGacaaggaacUAGCg -3'
miRNA:   3'- cGCGGCUGua--CGCAACugGCGU---------AUCG- -5'
8099 5' -53.1 NC_001978.2 + 33618 0.75 0.291961
Target:  5'- gGCGCCGACAaggGCGacacCCGCAaUGGCa -3'
miRNA:   3'- -CGCGGCUGUa--CGCaacuGGCGU-AUCG- -5'
8099 5' -53.1 NC_001978.2 + 30766 0.74 0.314504
Target:  5'- uUGCCGACgaccuucGUGaCGUUcgugacGACCGCAUGGCc -3'
miRNA:   3'- cGCGGCUG-------UAC-GCAA------CUGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 24159 0.74 0.323392
Target:  5'- -aGCCGACcgGCGUUGAcuCCGguUacGGCc -3'
miRNA:   3'- cgCGGCUGuaCGCAACU--GGCguA--UCG- -5'
8099 5' -53.1 NC_001978.2 + 20388 0.74 0.331634
Target:  5'- cGCGCCGuGCggGCuuccUUGACCGUcgAGCg -3'
miRNA:   3'- -CGCGGC-UGuaCGc---AACUGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 12839 0.73 0.357278
Target:  5'- aCGUCGGCGggugGCGUcGGCCGUAUcGCg -3'
miRNA:   3'- cGCGGCUGUa---CGCAaCUGGCGUAuCG- -5'
8099 5' -53.1 NC_001978.2 + 31308 0.73 0.366129
Target:  5'- gGCGCCGACGcGCugaguggUGACgGUGUGGCc -3'
miRNA:   3'- -CGCGGCUGUaCGca-----ACUGgCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 7517 0.72 0.393577
Target:  5'- -aGCCGGaGUGC-UUGugUGCGUGGCg -3'
miRNA:   3'- cgCGGCUgUACGcAACugGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 1032 0.72 0.393577
Target:  5'- cCGCCGAgAaGCGc-GACCGCAUgaAGCg -3'
miRNA:   3'- cGCGGCUgUaCGCaaCUGGCGUA--UCG- -5'
8099 5' -53.1 NC_001978.2 + 32106 0.72 0.436166
Target:  5'- cGUGCCGugAUgaccccggcucaggcGCGUcagcuUG-CCGCAUGGCu -3'
miRNA:   3'- -CGCGGCugUA---------------CGCA-----ACuGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 1492 0.71 0.462547
Target:  5'- gGCGCCGgaaGCAUcggaccGuUGUUGugUGCGUGGCg -3'
miRNA:   3'- -CGCGGC---UGUA------C-GCAACugGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 21976 0.7 0.515489
Target:  5'- uUGCCGACAUggcaGCGcgcGACCGCGaaGGCg -3'
miRNA:   3'- cGCGGCUGUA----CGCaa-CUGGCGUa-UCG- -5'
8099 5' -53.1 NC_001978.2 + 10952 0.7 0.515489
Target:  5'- -gGCCGAacCAUGCGUUGucggguuCCGC--GGCg -3'
miRNA:   3'- cgCGGCU--GUACGCAACu------GGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 36142 0.7 0.526379
Target:  5'- gGUGUCGGCggGUGagUGGcCCGUGUAGCa -3'
miRNA:   3'- -CGCGGCUGuaCGCa-ACU-GGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 13732 0.69 0.55953
Target:  5'- uUGCCGuugUcgGCGccGACCGCAUAGg -3'
miRNA:   3'- cGCGGCu--GuaCGCaaCUGGCGUAUCg -5'
8099 5' -53.1 NC_001978.2 + 30372 0.69 0.55953
Target:  5'- cGCGCCGAagccGCcc-GGCuCGCGUGGCa -3'
miRNA:   3'- -CGCGGCUgua-CGcaaCUG-GCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 21504 0.69 0.570716
Target:  5'- cCGCCGACGUGCaccccGugCGCugaGGCu -3'
miRNA:   3'- cGCGGCUGUACGcaa--CugGCGua-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.