Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8099 | 5' | -53.1 | NC_001978.2 | + | 524 | 0.67 | 0.683898 |
Target: 5'- uGCGCCugGGCAU-CGUUG-CCGCugaAGCc -3' miRNA: 3'- -CGCGG--CUGUAcGCAACuGGCGua-UCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 38576 | 0.69 | 0.581955 |
Target: 5'- aGCGCCgGGCAcgucgGCGUucggGACgGCGgAGCg -3' miRNA: 3'- -CGCGG-CUGUa----CGCAa---CUGgCGUaUCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 19373 | 0.69 | 0.593238 |
Target: 5'- aCGCCGACGUGaCGUgcaagcgGugCGCGaAGa -3' miRNA: 3'- cGCGGCUGUAC-GCAa------CugGCGUaUCg -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 22194 | 0.69 | 0.604556 |
Target: 5'- cGCGCCGAagaugugGCGUggucgGACaCGUAcGGCu -3' miRNA: 3'- -CGCGGCUgua----CGCAa----CUG-GCGUaUCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 13579 | 0.68 | 0.627258 |
Target: 5'- gGCGUCGACuccguucGCGcUGA-CGCAUGGUg -3' miRNA: 3'- -CGCGGCUGua-----CGCaACUgGCGUAUCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 29440 | 0.68 | 0.627258 |
Target: 5'- gGCGCCGACGUGU---GACCcucCGUGGa -3' miRNA: 3'- -CGCGGCUGUACGcaaCUGGc--GUAUCg -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 10887 | 0.68 | 0.649978 |
Target: 5'- cGgGUgGACccGUGUUGGCgaGCGUGGCc -3' miRNA: 3'- -CgCGgCUGuaCGCAACUGg-CGUAUCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 29974 | 0.68 | 0.649978 |
Target: 5'- uUGCCGACcgGC-UUG-CCGCugAGCg -3' miRNA: 3'- cGCGGCUGuaCGcAACuGGCGuaUCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 9295 | 0.67 | 0.669239 |
Target: 5'- uGgGCCGACGucgaaUGcCGUUGggcagaugcucaaaACCGgCAUGGCg -3' miRNA: 3'- -CgCGGCUGU-----AC-GCAAC--------------UGGC-GUAUCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 21504 | 0.69 | 0.570716 |
Target: 5'- cCGCCGACGUGCaccccGugCGCugaGGCu -3' miRNA: 3'- cGCGGCUGUACGcaa--CugGCGua-UCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 30372 | 0.69 | 0.55953 |
Target: 5'- cGCGCCGAagccGCcc-GGCuCGCGUGGCa -3' miRNA: 3'- -CGCGGCUgua-CGcaaCUG-GCGUAUCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 21976 | 0.7 | 0.515489 |
Target: 5'- uUGCCGACAUggcaGCGcgcGACCGCGaaGGCg -3' miRNA: 3'- cGCGGCUGUA----CGCaa-CUGGCGUa-UCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 3633 | 0.77 | 0.195253 |
Target: 5'- gGCGUCGACAacGCGc--ACCGCGUAGCg -3' miRNA: 3'- -CGCGGCUGUa-CGCaacUGGCGUAUCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 36004 | 0.75 | 0.277163 |
Target: 5'- cCGCCGACccggGCGUUGugUGCGacaaggaacUAGCg -3' miRNA: 3'- cGCGGCUGua--CGCAACugGCGU---------AUCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 30766 | 0.74 | 0.314504 |
Target: 5'- uUGCCGACgaccuucGUGaCGUUcgugacGACCGCAUGGCc -3' miRNA: 3'- cGCGGCUG-------UAC-GCAA------CUGGCGUAUCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 24159 | 0.74 | 0.323392 |
Target: 5'- -aGCCGACcgGCGUUGAcuCCGguUacGGCc -3' miRNA: 3'- cgCGGCUGuaCGCAACU--GGCguA--UCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 12839 | 0.73 | 0.357278 |
Target: 5'- aCGUCGGCGggugGCGUcGGCCGUAUcGCg -3' miRNA: 3'- cGCGGCUGUa---CGCAaCUGGCGUAuCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 32106 | 0.72 | 0.436166 |
Target: 5'- cGUGCCGugAUgaccccggcucaggcGCGUcagcuUG-CCGCAUGGCu -3' miRNA: 3'- -CGCGGCugUA---------------CGCA-----ACuGGCGUAUCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 1492 | 0.71 | 0.462547 |
Target: 5'- gGCGCCGgaaGCAUcggaccGuUGUUGugUGCGUGGCg -3' miRNA: 3'- -CGCGGC---UGUA------C-GCAACugGCGUAUCG- -5' |
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8099 | 5' | -53.1 | NC_001978.2 | + | 10952 | 0.7 | 0.515489 |
Target: 5'- -gGCCGAacCAUGCGUUGucggguuCCGC--GGCg -3' miRNA: 3'- cgCGGCU--GUACGCAACu------GGCGuaUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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