miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8099 5' -53.1 NC_001978.2 + 18888 0.66 0.781464
Target:  5'- aGCGUCGAUA-GCGggGaacGCCGCGc-GCa -3'
miRNA:   3'- -CGCGGCUGUaCGCaaC---UGGCGUauCG- -5'
8099 5' -53.1 NC_001978.2 + 31308 0.73 0.366129
Target:  5'- gGCGCCGACGcGCugaguggUGACgGUGUGGCc -3'
miRNA:   3'- -CGCGGCUGUaCGca-----ACUGgCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 20388 0.74 0.331634
Target:  5'- cGCGCCGuGCggGCuuccUUGACCGUcgAGCg -3'
miRNA:   3'- -CGCGGC-UGuaCGc---AACUGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 16755 1.15 0.000479
Target:  5'- gGCGCCGACAUGCGUUGACCGCAUAGCg -3'
miRNA:   3'- -CGCGGCUGUACGCAACUGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 34301 0.66 0.73921
Target:  5'- gGCGCaUGACGUaucGCGUUGcGCUcaGCGUGGUc -3'
miRNA:   3'- -CGCG-GCUGUA---CGCAAC-UGG--CGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 5869 0.67 0.718445
Target:  5'- gGCGCCGACGguaagaGCGgacugccacagguacUGACCGUuc-GCg -3'
miRNA:   3'- -CGCGGCUGUa-----CGCa--------------ACUGGCGuauCG- -5'
8099 5' -53.1 NC_001978.2 + 2652 0.67 0.683898
Target:  5'- uGUGCCGACccaacgccGgGUUG-CCGuCGUGGCu -3'
miRNA:   3'- -CGCGGCUGua------CgCAACuGGC-GUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 3086 0.67 0.680522
Target:  5'- cUGCCGACAccugaagcgcgucaUGCGgagUGACCGUcucGCc -3'
miRNA:   3'- cGCGGCUGU--------------ACGCa--ACUGGCGuauCG- -5'
8099 5' -53.1 NC_001978.2 + 30790 0.69 0.581955
Target:  5'- aCGUCGACAcggcgGCGUgaagGACgGCAagGGCg -3'
miRNA:   3'- cGCGGCUGUa----CGCAa---CUGgCGUa-UCG- -5'
8099 5' -53.1 NC_001978.2 + 36142 0.7 0.526379
Target:  5'- gGUGUCGGCggGUGagUGGcCCGUGUAGCa -3'
miRNA:   3'- -CGCGGCUGuaCGCa-ACU-GGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 32435 0.68 0.649978
Target:  5'- uGCGCCcuucCAUGCGUcGAgCCGUucGGCg -3'
miRNA:   3'- -CGCGGcu--GUACGCAaCU-GGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 23917 0.66 0.749978
Target:  5'- gGCGUCGuCAgaaGCG--GugCGCAUGGUg -3'
miRNA:   3'- -CGCGGCuGUa--CGCaaCugGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 1032 0.72 0.393577
Target:  5'- cCGCCGAgAaGCGc-GACCGCAUgaAGCg -3'
miRNA:   3'- cGCGGCUgUaCGCaaCUGGCGUA--UCG- -5'
8099 5' -53.1 NC_001978.2 + 18367 0.66 0.73921
Target:  5'- cGCGgCG-CGUGCGUaGuuGCCGCccGGCu -3'
miRNA:   3'- -CGCgGCuGUACGCAaC--UGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 31343 0.68 0.649978
Target:  5'- uCGCCG-UcgGCGUUGGCCGUg---- -3'
miRNA:   3'- cGCGGCuGuaCGCAACUGGCGuaucg -5'
8099 5' -53.1 NC_001978.2 + 7517 0.72 0.393577
Target:  5'- -aGCCGGaGUGC-UUGugUGCGUGGCg -3'
miRNA:   3'- cgCGGCUgUACGcAACugGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 33618 0.75 0.291961
Target:  5'- gGCGCCGACAaggGCGacacCCGCAaUGGCa -3'
miRNA:   3'- -CGCGGCUGUa--CGCaacuGGCGU-AUCG- -5'
8099 5' -53.1 NC_001978.2 + 28106 0.66 0.73921
Target:  5'- gGCGCCGACGggucGaCGUaGAaCGCAcugAGCg -3'
miRNA:   3'- -CGCGGCUGUa---C-GCAaCUgGCGUa--UCG- -5'
8099 5' -53.1 NC_001978.2 + 24086 0.67 0.714028
Target:  5'- uCGCCGACGUacagggcuucacccGCGUagucagUGACCGUuccGCg -3'
miRNA:   3'- cGCGGCUGUA--------------CGCA------ACUGGCGuauCG- -5'
8099 5' -53.1 NC_001978.2 + 13732 0.69 0.55953
Target:  5'- uUGCCGuugUcgGCGccGACCGCAUAGg -3'
miRNA:   3'- cGCGGCu--GuaCGCaaCUGGCGUAUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.