miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8099 5' -53.1 NC_001978.2 + 36455 0.66 0.771117
Target:  5'- gGCGaaguaCGGCGUGaCGaagcUGGgCGCGUGGCc -3'
miRNA:   3'- -CGCg----GCUGUAC-GCa---ACUgGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 12839 0.73 0.357278
Target:  5'- aCGUCGGCGggugGCGUcGGCCGUAUcGCg -3'
miRNA:   3'- cGCGGCUGUa---CGCAaCUGGCGUAuCG- -5'
8099 5' -53.1 NC_001978.2 + 33819 0.66 0.760617
Target:  5'- uUGUCGACGUGaCGUcgcucGACUGUcgGGCc -3'
miRNA:   3'- cGCGGCUGUAC-GCAa----CUGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 4921 0.66 0.749978
Target:  5'- gGCGCgCGAgCGUGCG---ACCGCugAGCu -3'
miRNA:   3'- -CGCG-GCU-GUACGCaacUGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 29094 0.66 0.73921
Target:  5'- gGCGUCGuc--GCGUUGGCaGCGUgaAGCg -3'
miRNA:   3'- -CGCGGCuguaCGCAACUGgCGUA--UCG- -5'
8099 5' -53.1 NC_001978.2 + 37221 0.67 0.717342
Target:  5'- cGCGCC-AUGUGCGaaGACCuagGCAUcgGGCg -3'
miRNA:   3'- -CGCGGcUGUACGCaaCUGG---CGUA--UCG- -5'
8099 5' -53.1 NC_001978.2 + 30085 0.67 0.710707
Target:  5'- uUGCCGACuggGCgGacgaauucacccaggUUGGCCGUGUGGCc -3'
miRNA:   3'- cGCGGCUGua-CG-C---------------AACUGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 32106 0.72 0.436166
Target:  5'- cGUGCCGugAUgaccccggcucaggcGCGUcagcuUG-CCGCAUGGCu -3'
miRNA:   3'- -CGCGGCugUA---------------CGCA-----ACuGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 21976 0.7 0.515489
Target:  5'- uUGCCGACAUggcaGCGcgcGACCGCGaaGGCg -3'
miRNA:   3'- cGCGGCUGUA----CGCaa-CUGGCGUa-UCG- -5'
8099 5' -53.1 NC_001978.2 + 30372 0.69 0.55953
Target:  5'- cGCGCCGAagccGCcc-GGCuCGCGUGGCa -3'
miRNA:   3'- -CGCGGCUgua-CGcaaCUG-GCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 21504 0.69 0.570716
Target:  5'- cCGCCGACGUGCaccccGugCGCugaGGCu -3'
miRNA:   3'- cGCGGCUGUACGcaa--CugGCGua-UCG- -5'
8099 5' -53.1 NC_001978.2 + 38576 0.69 0.581955
Target:  5'- aGCGCCgGGCAcgucgGCGUucggGACgGCGgAGCg -3'
miRNA:   3'- -CGCGG-CUGUa----CGCAa---CUGgCGUaUCG- -5'
8099 5' -53.1 NC_001978.2 + 19373 0.69 0.593238
Target:  5'- aCGCCGACGUGaCGUgcaagcgGugCGCGaAGa -3'
miRNA:   3'- cGCGGCUGUAC-GCAa------CugGCGUaUCg -5'
8099 5' -53.1 NC_001978.2 + 22194 0.69 0.604556
Target:  5'- cGCGCCGAagaugugGCGUggucgGACaCGUAcGGCu -3'
miRNA:   3'- -CGCGGCUgua----CGCAa----CUG-GCGUaUCG- -5'
8099 5' -53.1 NC_001978.2 + 9295 0.67 0.669239
Target:  5'- uGgGCCGACGucgaaUGcCGUUGggcagaugcucaaaACCGgCAUGGCg -3'
miRNA:   3'- -CgCGGCUGU-----AC-GCAAC--------------UGGC-GUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 524 0.67 0.683898
Target:  5'- uGCGCCugGGCAU-CGUUG-CCGCugaAGCc -3'
miRNA:   3'- -CGCGG--CUGUAcGCAACuGGCGua-UCG- -5'
8099 5' -53.1 NC_001978.2 + 12388 0.67 0.688392
Target:  5'- uGUGCCGAag-GCGUcgaccacguucacgcUGACCGUGU-GCc -3'
miRNA:   3'- -CGCGGCUguaCGCA---------------ACUGGCGUAuCG- -5'
8099 5' -53.1 NC_001978.2 + 24597 0.67 0.695115
Target:  5'- uGUGUCGGCGUGC-UUGcccuugccauuACCGCAaUGGUg -3'
miRNA:   3'- -CGCGGCUGUACGcAAC-----------UGGCGU-AUCG- -5'
8099 5' -53.1 NC_001978.2 + 15511 0.67 0.695115
Target:  5'- aCGCCGACGUaCGUUG-CCGUcccgGGUc -3'
miRNA:   3'- cGCGGCUGUAcGCAACuGGCGua--UCG- -5'
8099 5' -53.1 NC_001978.2 + 33079 0.67 0.706267
Target:  5'- cGCGCCggucGACAUG-GUUGuaACCgggaaccuucggGCGUGGCg -3'
miRNA:   3'- -CGCGG----CUGUACgCAAC--UGG------------CGUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.