miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8099 5' -53.1 NC_001978.2 + 38576 0.69 0.581955
Target:  5'- aGCGCCgGGCAcgucgGCGUucggGACgGCGgAGCg -3'
miRNA:   3'- -CGCGG-CUGUa----CGCAa---CUGgCGUaUCG- -5'
8099 5' -53.1 NC_001978.2 + 37221 0.67 0.717342
Target:  5'- cGCGCC-AUGUGCGaaGACCuagGCAUcgGGCg -3'
miRNA:   3'- -CGCGGcUGUACGCaaCUGG---CGUA--UCG- -5'
8099 5' -53.1 NC_001978.2 + 36455 0.66 0.771117
Target:  5'- gGCGaaguaCGGCGUGaCGaagcUGGgCGCGUGGCc -3'
miRNA:   3'- -CGCg----GCUGUAC-GCa---ACUgGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 36142 0.7 0.526379
Target:  5'- gGUGUCGGCggGUGagUGGcCCGUGUAGCa -3'
miRNA:   3'- -CGCGGCUGuaCGCa-ACU-GGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 36004 0.75 0.277163
Target:  5'- cCGCCGACccggGCGUUGugUGCGacaaggaacUAGCg -3'
miRNA:   3'- cGCGGCUGua--CGCAACugGCGU---------AUCG- -5'
8099 5' -53.1 NC_001978.2 + 34301 0.66 0.73921
Target:  5'- gGCGCaUGACGUaucGCGUUGcGCUcaGCGUGGUc -3'
miRNA:   3'- -CGCG-GCUGUA---CGCAAC-UGG--CGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 33819 0.66 0.760617
Target:  5'- uUGUCGACGUGaCGUcgcucGACUGUcgGGCc -3'
miRNA:   3'- cGCGGCUGUAC-GCAa----CUGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 33618 0.75 0.291961
Target:  5'- gGCGCCGACAaggGCGacacCCGCAaUGGCa -3'
miRNA:   3'- -CGCGGCUGUa--CGCaacuGGCGU-AUCG- -5'
8099 5' -53.1 NC_001978.2 + 33079 0.67 0.706267
Target:  5'- cGCGCCggucGACAUG-GUUGuaACCgggaaccuucggGCGUGGCg -3'
miRNA:   3'- -CGCGG----CUGUACgCAAC--UGG------------CGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 32435 0.68 0.649978
Target:  5'- uGCGCCcuucCAUGCGUcGAgCCGUucGGCg -3'
miRNA:   3'- -CGCGGcu--GUACGCAaCU-GGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 32106 0.72 0.436166
Target:  5'- cGUGCCGugAUgaccccggcucaggcGCGUcagcuUG-CCGCAUGGCu -3'
miRNA:   3'- -CGCGGCugUA---------------CGCA-----ACuGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 31343 0.68 0.649978
Target:  5'- uCGCCG-UcgGCGUUGGCCGUg---- -3'
miRNA:   3'- cGCGGCuGuaCGCAACUGGCGuaucg -5'
8099 5' -53.1 NC_001978.2 + 31308 0.73 0.366129
Target:  5'- gGCGCCGACGcGCugaguggUGACgGUGUGGCc -3'
miRNA:   3'- -CGCGGCUGUaCGca-----ACUGgCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 30790 0.69 0.581955
Target:  5'- aCGUCGACAcggcgGCGUgaagGACgGCAagGGCg -3'
miRNA:   3'- cGCGGCUGUa----CGCAa---CUGgCGUa-UCG- -5'
8099 5' -53.1 NC_001978.2 + 30766 0.74 0.314504
Target:  5'- uUGCCGACgaccuucGUGaCGUUcgugacGACCGCAUGGCc -3'
miRNA:   3'- cGCGGCUG-------UAC-GCAA------CUGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 30372 0.69 0.55953
Target:  5'- cGCGCCGAagccGCcc-GGCuCGCGUGGCa -3'
miRNA:   3'- -CGCGGCUgua-CGcaaCUG-GCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 30085 0.67 0.710707
Target:  5'- uUGCCGACuggGCgGacgaauucacccaggUUGGCCGUGUGGCc -3'
miRNA:   3'- cGCGGCUGua-CG-C---------------AACUGGCGUAUCG- -5'
8099 5' -53.1 NC_001978.2 + 30011 0.66 0.781464
Target:  5'- aGCGaCCGACucacGCGUUGucgcccuugcCCGUAaGGCg -3'
miRNA:   3'- -CGC-GGCUGua--CGCAACu---------GGCGUaUCG- -5'
8099 5' -53.1 NC_001978.2 + 29974 0.68 0.649978
Target:  5'- uUGCCGACcgGC-UUG-CCGCugAGCg -3'
miRNA:   3'- cGCGGCUGuaCGcAACuGGCGuaUCG- -5'
8099 5' -53.1 NC_001978.2 + 29440 0.68 0.627258
Target:  5'- gGCGCCGACGUGU---GACCcucCGUGGa -3'
miRNA:   3'- -CGCGGCUGUACGcaaCUGGc--GUAUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.