miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
81 5' -57.1 AC_000005.1 + 9701 0.66 0.451337
Target:  5'- uCCGUAGCcuugcaGCGGuuGUAAUaaAGCUAa- -3'
miRNA:   3'- -GGCGUCGa-----CGCCggCGUUG--UCGAUaa -5'
81 5' -57.1 AC_000005.1 + 11604 0.66 0.431065
Target:  5'- cCCGCGGUuuugGCGGCCauGCAAagcCAGCc--- -3'
miRNA:   3'- -GGCGUCGa---CGCCGG--CGUU---GUCGauaa -5'
81 5' -57.1 AC_000005.1 + 23219 0.66 0.431065
Target:  5'- gCGCGGCUGCGGUUaGCucGACAGg---- -3'
miRNA:   3'- gGCGUCGACGCCGG-CG--UUGUCgauaa -5'
81 5' -57.1 AC_000005.1 + 24731 0.66 0.421131
Target:  5'- uUCGCAGCaUGUccccgaaaGCCGCAAaacaGGCUAUUg -3'
miRNA:   3'- -GGCGUCG-ACGc-------CGGCGUUg---UCGAUAA- -5'
81 5' -57.1 AC_000005.1 + 10512 0.67 0.354762
Target:  5'- aCCGCuGCUGaGGCCGUggUugcccugGGCUGa- -3'
miRNA:   3'- -GGCGuCGACgCCGGCGuuG-------UCGAUaa -5'
81 5' -57.1 AC_000005.1 + 902 0.69 0.282501
Target:  5'- uCCGCAGCUGCuGCUGCc---GCUGa- -3'
miRNA:   3'- -GGCGUCGACGcCGGCGuuguCGAUaa -5'
81 5' -57.1 AC_000005.1 + 3636 0.75 0.102441
Target:  5'- gCCGUAGaaGCGGCCGCGGaAGCUGc- -3'
miRNA:   3'- -GGCGUCgaCGCCGGCGUUgUCGAUaa -5'
81 5' -57.1 AC_000005.1 + 15384 0.75 0.102441
Target:  5'- -aGCuGUUGCGGCCGCAGCuGCg--- -3'
miRNA:   3'- ggCGuCGACGCCGGCGUUGuCGauaa -5'
81 5' -57.1 AC_000005.1 + 3575 0.78 0.065469
Target:  5'- gCUGCAGCUuccGCGGCCGCuucuACGGCUc-- -3'
miRNA:   3'- -GGCGUCGA---CGCCGGCGu---UGUCGAuaa -5'
81 5' -57.1 AC_000005.1 + 15328 1.07 0.000349
Target:  5'- gCCGCAGCUGCGGCCGCAACAGCUAUUg -3'
miRNA:   3'- -GGCGUCGACGCCGGCGUUGUCGAUAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.