Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8101 | 3' | -61 | NC_001978.2 | + | 17912 | 1.07 | 0.000299 |
Target: 5'- uCGCCCGGCACGCCGUCAGCGUCCUUGc -3' miRNA: 3'- -GCGGGCCGUGCGGCAGUCGCAGGAAC- -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 39230 | 0.81 | 0.026985 |
Target: 5'- uCGCCCcgggucGGCACGgCGUCAGCGUCCa-- -3' miRNA: 3'- -GCGGG------CCGUGCgGCAGUCGCAGGaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 35157 | 0.78 | 0.046635 |
Target: 5'- uGCCCGGCuucugaguuCGCCGUCAGCGcCCc-- -3' miRNA: 3'- gCGGGCCGu--------GCGGCAGUCGCaGGaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 26791 | 0.76 | 0.071465 |
Target: 5'- gCGCCCGaaCACGuCCGUCAGCGUCUccgUGa -3' miRNA: 3'- -GCGGGCc-GUGC-GGCAGUCGCAGGa--AC- -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 22337 | 0.75 | 0.089493 |
Target: 5'- gGUCCGGCGucggguUGCCGUCGGCGUCg--- -3' miRNA: 3'- gCGGGCCGU------GCGGCAGUCGCAGgaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 19736 | 0.73 | 0.114916 |
Target: 5'- uGCCCaGCGCGCgagccuUGUCgaaGGCGUCCUUGc -3' miRNA: 3'- gCGGGcCGUGCG------GCAG---UCGCAGGAAC- -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 38106 | 0.72 | 0.143029 |
Target: 5'- gCGUcaCCGGCuCGCCGUCGuCGUCCUg- -3' miRNA: 3'- -GCG--GGCCGuGCGGCAGUcGCAGGAac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 19441 | 0.71 | 0.150983 |
Target: 5'- gCGCaCCGcuuGCACGUcaCGUCGGCGUCCg-- -3' miRNA: 3'- -GCG-GGC---CGUGCG--GCAGUCGCAGGaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 32733 | 0.71 | 0.172648 |
Target: 5'- aCGCCCGGCG-GCuucccccagggCGUCAGCGUCa--- -3' miRNA: 3'- -GCGGGCCGUgCG-----------GCAGUCGCAGgaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 36795 | 0.7 | 0.182067 |
Target: 5'- gGCCUGGgGCGCCGUCuccGGC-UCCgUGa -3' miRNA: 3'- gCGGGCCgUGCGGCAG---UCGcAGGaAC- -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 12475 | 0.7 | 0.185469 |
Target: 5'- aCGUCCGGCACaCgGUCAGCGUgaacguggucgacgCCUUc -3' miRNA: 3'- -GCGGGCCGUGcGgCAGUCGCA--------------GGAAc -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 26185 | 0.7 | 0.207621 |
Target: 5'- uCGCCCaggauGCGCGCagCGUCGGCGcCCUg- -3' miRNA: 3'- -GCGGGc----CGUGCG--GCAGUCGCaGGAac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 11425 | 0.69 | 0.236214 |
Target: 5'- aCGCCCGGCAUgaaaGCCGcCugaagGGCGUUCa-- -3' miRNA: 3'- -GCGGGCCGUG----CGGCaG-----UCGCAGGaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 30295 | 0.69 | 0.238639 |
Target: 5'- gGcCCCGGCguuGCCGUugcgcucuucccgcaCAGCGUCCUUc -3' miRNA: 3'- gC-GGGCCGug-CGGCA---------------GUCGCAGGAAc -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 23003 | 0.69 | 0.242315 |
Target: 5'- cCGCCCGGguUGCCGa---CGUCCUUc -3' miRNA: 3'- -GCGGGCCguGCGGCagucGCAGGAAc -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 35435 | 0.68 | 0.251076 |
Target: 5'- uGCCCaacaagaucacuuucGGCGCGuCCGUacuGGCGUCCg-- -3' miRNA: 3'- gCGGG---------------CCGUGC-GGCAg--UCGCAGGaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 1825 | 0.68 | 0.281705 |
Target: 5'- aGCCCuGU-UGCCGUcCGGCGUCCg-- -3' miRNA: 3'- gCGGGcCGuGCGGCA-GUCGCAGGaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 30513 | 0.67 | 0.310686 |
Target: 5'- aGCgugUCGGCAagggaaCCGUCGGCGUCCg-- -3' miRNA: 3'- gCG---GGCCGUgc----GGCAGUCGCAGGaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 38694 | 0.67 | 0.326006 |
Target: 5'- cCGCCCGGCGCGgcauUCGUUcaggauGCGUUCg-- -3' miRNA: 3'- -GCGGGCCGUGC----GGCAGu-----CGCAGGaac -5' |
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8101 | 3' | -61 | NC_001978.2 | + | 11087 | 0.66 | 0.341072 |
Target: 5'- gCGCCCaGGCgacuucGCGCCcaaucgcgaacggGUCGGCGUUCg-- -3' miRNA: 3'- -GCGGG-CCG------UGCGG-------------CAGUCGCAGGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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