Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8101 | 5' | -53.8 | NC_001978.2 | + | 60 | 0.72 | 0.386022 |
Target: 5'- gCCAACGACCcgugugaacGCUGGGcaaGCGGCAc- -3' miRNA: 3'- gGGUUGCUGG---------CGACUUug-CGCCGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 184 | 0.67 | 0.651914 |
Target: 5'- gCCAACGcuGCCGCUGAGucCGCuGCc-- -3' miRNA: 3'- gGGUUGC--UGGCGACUUu-GCGcCGuau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 638 | 0.72 | 0.376851 |
Target: 5'- gCUUAGCGcUUGCUG-AACGCGGCGUAc -3' miRNA: 3'- -GGGUUGCuGGCGACuUUGCGCCGUAU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 1034 | 0.72 | 0.358954 |
Target: 5'- uCCCGccgagaagcGCGACCGCaUGAAGCGCGaCGa- -3' miRNA: 3'- -GGGU---------UGCUGGCG-ACUUUGCGCcGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 1623 | 0.72 | 0.350231 |
Target: 5'- gCCAACGACCGCaaucAGGCGC-GCAUGg -3' miRNA: 3'- gGGUUGCUGGCGac--UUUGCGcCGUAU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 2714 | 0.66 | 0.685791 |
Target: 5'- gCCGuucACGG-CGCUGuGAUGUGGCGUGa -3' miRNA: 3'- gGGU---UGCUgGCGACuUUGCGCCGUAU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 3597 | 0.68 | 0.606522 |
Target: 5'- gCC--CGugCGCgcGAAGCGUGGCGUGc -3' miRNA: 3'- gGGuuGCugGCGa-CUUUGCGCCGUAU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 4526 | 0.66 | 0.69699 |
Target: 5'- uCCCGacACGACCGUUGGu-CGCGaCGUc -3' miRNA: 3'- -GGGU--UGCUGGCGACUuuGCGCcGUAu -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 4636 | 0.73 | 0.316864 |
Target: 5'- -aCGACGACC-CUGAGACGgGGCu-- -3' miRNA: 3'- ggGUUGCUGGcGACUUUGCgCCGuau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 5495 | 0.74 | 0.293448 |
Target: 5'- gCCCAugGAaCGCUGAGuCGUGGCcgGg -3' miRNA: 3'- -GGGUugCUgGCGACUUuGCGCCGuaU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 5839 | 0.67 | 0.640567 |
Target: 5'- uUCAACGGCaagguCGUUGAGACGgacgaCGGCAUGc -3' miRNA: 3'- gGGUUGCUG-----GCGACUUUGC-----GCCGUAU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 9708 | 0.74 | 0.285948 |
Target: 5'- aCCCGgcggagcguaucGCGACCGCUGuGACGCucuucGGCAc- -3' miRNA: 3'- -GGGU------------UGCUGGCGACuUUGCG-----CCGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 9789 | 0.8 | 0.11788 |
Target: 5'- aCCCGucguCGGCCGUUGAGACGCugGGCAa- -3' miRNA: 3'- -GGGUu---GCUGGCGACUUUGCG--CCGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 11597 | 0.68 | 0.6224 |
Target: 5'- uCCCAAcugggcuugugcuucCGGCCGUUGugcCGUGGCAg- -3' miRNA: 3'- -GGGUU---------------GCUGGCGACuuuGCGCCGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 12082 | 0.7 | 0.464433 |
Target: 5'- gCCAGuCGGCaaGCUGAGACGCGcCAUAg -3' miRNA: 3'- gGGUU-GCUGg-CGACUUUGCGCcGUAU- -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 12345 | 0.68 | 0.583925 |
Target: 5'- uCCCGacACGGCCGgac-AACGCGGCGg- -3' miRNA: 3'- -GGGU--UGCUGGCgacuUUGCGCCGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 14365 | 0.66 | 0.719175 |
Target: 5'- cCUCAACGAUCGCUcuuAC-CGGCAc- -3' miRNA: 3'- -GGGUUGCUGGCGAcuuUGcGCCGUau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 14437 | 0.67 | 0.629212 |
Target: 5'- uCCCGuuCGGCugggaCGCUGAGgacgGCGCGGCu-- -3' miRNA: 3'- -GGGUu-GCUG-----GCGACUU----UGCGCCGuau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 14830 | 0.68 | 0.599729 |
Target: 5'- gCCAAUGACCGCcggugcuagccguaGGAAUGCGGUc-- -3' miRNA: 3'- gGGUUGCUGGCGa-------------CUUUGCGCCGuau -5' |
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8101 | 5' | -53.8 | NC_001978.2 | + | 15644 | 0.69 | 0.517434 |
Target: 5'- uUCCGGCGGCuuCGCUGggGCucgaCGGCGa- -3' miRNA: 3'- -GGGUUGCUG--GCGACuuUGc---GCCGUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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