miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8101 5' -53.8 NC_001978.2 + 184 0.67 0.651914
Target:  5'- gCCAACGcuGCCGCUGAGucCGCuGCc-- -3'
miRNA:   3'- gGGUUGC--UGGCGACUUu-GCGcCGuau -5'
8101 5' -53.8 NC_001978.2 + 12345 0.68 0.583925
Target:  5'- uCCCGacACGGCCGgac-AACGCGGCGg- -3'
miRNA:   3'- -GGGU--UGCUGGCgacuUUGCGCCGUau -5'
8101 5' -53.8 NC_001978.2 + 38143 0.68 0.591818
Target:  5'- --gGGCGAgCCGCUGAcgucccgaaggcguGGCGCGGCu-- -3'
miRNA:   3'- gggUUGCU-GGCGACU--------------UUGCGCCGuau -5'
8101 5' -53.8 NC_001978.2 + 3597 0.68 0.606522
Target:  5'- gCC--CGugCGCgcGAAGCGUGGCGUGc -3'
miRNA:   3'- gGGuuGCugGCGa-CUUUGCGCCGUAU- -5'
8101 5' -53.8 NC_001978.2 + 11597 0.68 0.6224
Target:  5'- uCCCAAcugggcuugugcuucCGGCCGUUGugcCGUGGCAg- -3'
miRNA:   3'- -GGGUU---------------GCUGGCGACuuuGCGCCGUau -5'
8101 5' -53.8 NC_001978.2 + 14437 0.67 0.629212
Target:  5'- uCCCGuuCGGCugggaCGCUGAGgacgGCGCGGCu-- -3'
miRNA:   3'- -GGGUu-GCUG-----GCGACUU----UGCGCCGuau -5'
8101 5' -53.8 NC_001978.2 + 5839 0.67 0.640567
Target:  5'- uUCAACGGCaagguCGUUGAGACGgacgaCGGCAUGc -3'
miRNA:   3'- gGGUUGCUG-----GCGACUUUGC-----GCCGUAU- -5'
8101 5' -53.8 NC_001978.2 + 20670 0.67 0.640567
Target:  5'- gCCGACGACgaCGUUGA---GCGGCAg- -3'
miRNA:   3'- gGGUUGCUG--GCGACUuugCGCCGUau -5'
8101 5' -53.8 NC_001978.2 + 36279 0.67 0.640567
Target:  5'- aCCCGGCGGgUGCUGAccGgGgGGCGUu -3'
miRNA:   3'- -GGGUUGCUgGCGACUu-UgCgCCGUAu -5'
8101 5' -53.8 NC_001978.2 + 17436 0.69 0.550372
Target:  5'- aCgAACGGCagCGCUGAgGGCGaCGGCGUGu -3'
miRNA:   3'- gGgUUGCUG--GCGACU-UUGC-GCCGUAU- -5'
8101 5' -53.8 NC_001978.2 + 35933 0.69 0.528332
Target:  5'- gCCCu-UGAUCGCUGAAG-GCGGCu-- -3'
miRNA:   3'- -GGGuuGCUGGCGACUUUgCGCCGuau -5'
8101 5' -53.8 NC_001978.2 + 15644 0.69 0.517434
Target:  5'- uUCCGGCGGCuuCGCUGggGCucgaCGGCGa- -3'
miRNA:   3'- -GGGUUGCUG--GCGACuuUGc---GCCGUau -5'
8101 5' -53.8 NC_001978.2 + 37646 0.76 0.196374
Target:  5'- -aCAGCGuCCGcCUGAGugGCGGCAg- -3'
miRNA:   3'- ggGUUGCuGGC-GACUUugCGCCGUau -5'
8101 5' -53.8 NC_001978.2 + 9708 0.74 0.285948
Target:  5'- aCCCGgcggagcguaucGCGACCGCUGuGACGCucuucGGCAc- -3'
miRNA:   3'- -GGGU------------UGCUGGCGACuUUGCG-----CCGUau -5'
8101 5' -53.8 NC_001978.2 + 4636 0.73 0.316864
Target:  5'- -aCGACGACC-CUGAGACGgGGCu-- -3'
miRNA:   3'- ggGUUGCUGGcGACUUUGCgCCGuau -5'
8101 5' -53.8 NC_001978.2 + 1623 0.72 0.350231
Target:  5'- gCCAACGACCGCaaucAGGCGC-GCAUGg -3'
miRNA:   3'- gGGUUGCUGGCGac--UUUGCGcCGUAU- -5'
8101 5' -53.8 NC_001978.2 + 638 0.72 0.376851
Target:  5'- gCUUAGCGcUUGCUG-AACGCGGCGUAc -3'
miRNA:   3'- -GGGUUGCuGGCGACuUUGCGCCGUAU- -5'
8101 5' -53.8 NC_001978.2 + 60 0.72 0.386022
Target:  5'- gCCAACGACCcgugugaacGCUGGGcaaGCGGCAc- -3'
miRNA:   3'- gGGUUGCUGG---------CGACUUug-CGCCGUau -5'
8101 5' -53.8 NC_001978.2 + 30680 0.71 0.414404
Target:  5'- cCCCAGCGAcCCGaCUGAG-CGcCGGUAc- -3'
miRNA:   3'- -GGGUUGCU-GGC-GACUUuGC-GCCGUau -5'
8101 5' -53.8 NC_001978.2 + 39043 0.7 0.464433
Target:  5'- gCCCGACGuaauCCGgUG-GugGUGGCGUGa -3'
miRNA:   3'- -GGGUUGCu---GGCgACuUugCGCCGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.