miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8102 3' -54.9 NC_001978.2 + 20969 0.66 0.663457
Target:  5'- cGgGCaaGCuCCGUccGGCCGUAGCGGg- -3'
miRNA:   3'- cCgCGaaCG-GGUA--CCGGCAUUGCUag -5'
8102 3' -54.9 NC_001978.2 + 34225 0.66 0.652179
Target:  5'- cGGCGCUcaguUGCCCAcgugGGCaCGcuccGGCGGa- -3'
miRNA:   3'- -CCGCGA----ACGGGUa---CCG-GCa---UUGCUag -5'
8102 3' -54.9 NC_001978.2 + 28548 0.66 0.652179
Target:  5'- gGGCGCgugaGCCUAacccguUGGCCGaAGCcGUCc -3'
miRNA:   3'- -CCGCGaa--CGGGU------ACCGGCaUUGcUAG- -5'
8102 3' -54.9 NC_001978.2 + 18467 0.66 0.640881
Target:  5'- cGGCGUUacccgggaaGUCCGgcuucacGGCCGUAGCGAc- -3'
miRNA:   3'- -CCGCGAa--------CGGGUa------CCGGCAUUGCUag -5'
8102 3' -54.9 NC_001978.2 + 36479 0.66 0.629575
Target:  5'- gGGCGCgugGCCCGUcgcguuCCG-AugGAUCa -3'
miRNA:   3'- -CCGCGaa-CGGGUAcc----GGCaUugCUAG- -5'
8102 3' -54.9 NC_001978.2 + 20346 0.67 0.595713
Target:  5'- cGGUGCUUcGUCgGcagGGUCGUGAUGAUg -3'
miRNA:   3'- -CCGCGAA-CGGgUa--CCGGCAUUGCUAg -5'
8102 3' -54.9 NC_001978.2 + 35778 0.67 0.584478
Target:  5'- uGGCGCg-GCagCGUGGCCGUGuCGuccGUCu -3'
miRNA:   3'- -CCGCGaaCGg-GUACCGGCAUuGC---UAG- -5'
8102 3' -54.9 NC_001978.2 + 14004 0.67 0.572168
Target:  5'- uGGCGCUUGCCaauaaggaGGUUuucaccaGUGGCGAUUa -3'
miRNA:   3'- -CCGCGAACGGgua-----CCGG-------CAUUGCUAG- -5'
8102 3' -54.9 NC_001978.2 + 30402 0.68 0.540044
Target:  5'- aGuCGCUUGCCCuucGGCgG-GAUGAUCu -3'
miRNA:   3'- cC-GCGAACGGGua-CCGgCaUUGCUAG- -5'
8102 3' -54.9 NC_001978.2 + 18507 0.68 0.540044
Target:  5'- cGGCGCUaUGCCCccaggAUGG-CGUGaACGAg- -3'
miRNA:   3'- -CCGCGA-ACGGG-----UACCgGCAU-UGCUag -5'
8102 3' -54.9 NC_001978.2 + 33089 0.68 0.540044
Target:  5'- cGgGCUUGCUUccGGCCGUAGCc--- -3'
miRNA:   3'- cCgCGAACGGGuaCCGGCAUUGcuag -5'
8102 3' -54.9 NC_001978.2 + 17752 0.68 0.538947
Target:  5'- gGGCGCcacgUGcCCCGUaGCCGUacucaagaccguuGAUGGUCa -3'
miRNA:   3'- -CCGCGa---AC-GGGUAcCGGCA-------------UUGCUAG- -5'
8102 3' -54.9 NC_001978.2 + 24241 0.68 0.518247
Target:  5'- uGCGCUcaCCCA-GGCCGUAACcggaGUCa -3'
miRNA:   3'- cCGCGAacGGGUaCCGGCAUUGc---UAG- -5'
8102 3' -54.9 NC_001978.2 + 31357 0.69 0.455199
Target:  5'- cGGUGCUgaucacgucGCCgucggcguUGGCCGUGACGAacUCg -3'
miRNA:   3'- -CCGCGAa--------CGGgu------ACCGGCAUUGCU--AG- -5'
8102 3' -54.9 NC_001978.2 + 33061 0.69 0.445091
Target:  5'- uGCGCUacUGCCCAacGCCGcgcCGGUCg -3'
miRNA:   3'- cCGCGA--ACGGGUacCGGCauuGCUAG- -5'
8102 3' -54.9 NC_001978.2 + 11610 0.69 0.435111
Target:  5'- uGUGCUuccgGCCguUGuGCCGUGGCaGAUCg -3'
miRNA:   3'- cCGCGAa---CGGguAC-CGGCAUUG-CUAG- -5'
8102 3' -54.9 NC_001978.2 + 2529 0.7 0.396529
Target:  5'- uGGUGCcUGCcacucaggCCGUGuacgacgcguGCCGUGACGGUCg -3'
miRNA:   3'- -CCGCGaACG--------GGUAC----------CGGCAUUGCUAG- -5'
8102 3' -54.9 NC_001978.2 + 38733 0.7 0.387233
Target:  5'- -uUGCUcGCCC-UGGgCGUGACGAUUg -3'
miRNA:   3'- ccGCGAaCGGGuACCgGCAUUGCUAG- -5'
8102 3' -54.9 NC_001978.2 + 2363 0.71 0.351512
Target:  5'- uGGCGCgUGCCUAUGGCggaCGUccGCGAa- -3'
miRNA:   3'- -CCGCGaACGGGUACCG---GCAu-UGCUag -5'
8102 3' -54.9 NC_001978.2 + 11516 0.71 0.349789
Target:  5'- cGGCGCcgaccgcuugcgUGCCCGUgccaucacgaaGGCCGUu-CGGUCg -3'
miRNA:   3'- -CCGCGa-----------ACGGGUA-----------CCGGCAuuGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.