Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 5702 | 0.68 | 0.194427 |
Target: 5'- cGUCaGCCUCaccgaaGGCAgcguUGGCGCCGGUcGCg -3' miRNA: 3'- -CAGcCGGGGg-----CCGU----GCCGCGGUUA-CG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 32362 | 0.68 | 0.189418 |
Target: 5'- uUCGGCUCaguaGGCACGGCGC--GUGa -3' miRNA: 3'- cAGCCGGGgg--CCGUGCCGCGguUACg -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 30143 | 0.69 | 0.175067 |
Target: 5'- cGUCcGCCCaguCGGCaaaGCGuGCGCCAccAUGCg -3' miRNA: 3'- -CAGcCGGGg--GCCG---UGC-CGCGGU--UACG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 17248 | 0.69 | 0.170503 |
Target: 5'- aGUCGGCgcacuaCCCGcGCACGGCuUCGuGUGCg -3' miRNA: 3'- -CAGCCGg-----GGGC-CGUGCCGcGGU-UACG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 32700 | 0.69 | 0.166046 |
Target: 5'- aGUCGGCCgguCCCGGUuguagGCaGCGCCGGacacGCg -3' miRNA: 3'- -CAGCCGG---GGGCCG-----UGcCGCGGUUa---CG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 14556 | 0.69 | 0.166046 |
Target: 5'- cGUCgGGCCUuCCGGUaACGGUGCUGAaGCu -3' miRNA: 3'- -CAG-CCGGG-GGCCG-UGCCGCGGUUaCG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 37796 | 0.69 | 0.161693 |
Target: 5'- aUgGGUCaCCCaGCAUGGCGCCcagGCg -3' miRNA: 3'- cAgCCGG-GGGcCGUGCCGCGGuuaCG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 9104 | 0.69 | 0.161263 |
Target: 5'- -cCGGCuUCCCGcucaagcgccucaGCGauacCGGCGCCAAUGCc -3' miRNA: 3'- caGCCG-GGGGC-------------CGU----GCCGCGGUUACG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 19318 | 0.7 | 0.153295 |
Target: 5'- -aUGGCuuCCCCGGCguGCGGCGgCAAccggGCa -3' miRNA: 3'- caGCCG--GGGGCCG--UGCCGCgGUUa---CG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 8930 | 0.71 | 0.126592 |
Target: 5'- gGUCGagccacagcGCCCCCuuacgucaugacgGGCguGCGGCGCuCAGUGCc -3' miRNA: 3'- -CAGC---------CGGGGG-------------CCG--UGCCGCG-GUUACG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 33646 | 0.71 | 0.118261 |
Target: 5'- -cCGGCCCggggucacacccgaCGGuCACGGCGCCGAcaaggGCg -3' miRNA: 3'- caGCCGGGg-------------GCC-GUGCCGCGGUUa----CG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 17317 | 0.71 | 0.116976 |
Target: 5'- gGUCGGCguaUCCGGCGguCGGCGCUcaGGUGUu -3' miRNA: 3'- -CAGCCGg--GGGCCGU--GCCGCGG--UUACG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 38701 | 0.71 | 0.116976 |
Target: 5'- uGUUGaGCCgCCCGGCGCGGCauucGUUcagGAUGCg -3' miRNA: 3'- -CAGC-CGG-GGGCCGUGCCG----CGG---UUACG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 19555 | 0.72 | 0.110746 |
Target: 5'- -cCGGCCgugaagggUCaCGGCACGGCGUCAccgaucGUGCg -3' miRNA: 3'- caGCCGG--------GG-GCCGUGCCGCGGU------UACG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 36550 | 0.72 | 0.107748 |
Target: 5'- uGUCGGCUCaugaCUGGguCGGCGUggCAGUGCa -3' miRNA: 3'- -CAGCCGGG----GGCCguGCCGCG--GUUACG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 26166 | 0.74 | 0.072859 |
Target: 5'- cGUCGGCgCCCUGaGUgcucgacaccugaACGGCGCCGguacgGUGCg -3' miRNA: 3'- -CAGCCG-GGGGC-CG-------------UGCCGCGGU-----UACG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 39234 | 0.75 | 0.063495 |
Target: 5'- cGUCucGCCCCggguCGGCACGGCGUCAgcguccAUGCg -3' miRNA: 3'- -CAGc-CGGGG----GCCGUGCCGCGGU------UACG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 3599 | 0.78 | 0.034986 |
Target: 5'- -aCaGCgCCCGGCAUGGCGCCAuugGCa -3' miRNA: 3'- caGcCGgGGGCCGUGCCGCGGUua-CG- -5' |
|||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 19931 | 1.11 | 0.000086 |
Target: 5'- cGUCGGCCCCCGGCACGGCGCCAAUGCg -3' miRNA: 3'- -CAGCCGGGGGCCGUGCCGCGGUUACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home