Results 21 - 39 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 19555 | 0.72 | 0.110746 |
Target: 5'- -cCGGCCgugaagggUCaCGGCACGGCGUCAccgaucGUGCg -3' miRNA: 3'- caGCCGG--------GG-GCCGUGCCGCGGU------UACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 26166 | 0.74 | 0.072859 |
Target: 5'- cGUCGGCgCCCUGaGUgcucgacaccugaACGGCGCCGguacgGUGCg -3' miRNA: 3'- -CAGCCG-GGGGC-CG-------------UGCCGCGGU-----UACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 39234 | 0.75 | 0.063495 |
Target: 5'- cGUCucGCCCCggguCGGCACGGCGUCAgcguccAUGCg -3' miRNA: 3'- -CAGc-CGGGG----GCCGUGCCGCGGU------UACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 3599 | 0.78 | 0.034986 |
Target: 5'- -aCaGCgCCCGGCAUGGCGCCAuugGCa -3' miRNA: 3'- caGcCGgGGGCCGUGCCGCGGUua-CG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 32362 | 0.68 | 0.189418 |
Target: 5'- uUCGGCUCaguaGGCACGGCGC--GUGa -3' miRNA: 3'- cAGCCGGGgg--CCGUGCCGCGguUACg -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 5702 | 0.68 | 0.194427 |
Target: 5'- cGUCaGCCUCaccgaaGGCAgcguUGGCGCCGGUcGCg -3' miRNA: 3'- -CAGcCGGGGg-----CCGU----GCCGCGGUUA-CG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 33282 | 0.68 | 0.199551 |
Target: 5'- aGUCGGCauguCCUGaacggaGUugGGCGCUAcgGCg -3' miRNA: 3'- -CAGCCGg---GGGC------CGugCCGCGGUuaCG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 28290 | 0.66 | 0.28428 |
Target: 5'- cGUCGGCCggaugCUCaGGCGCgcguguucGGCGUCAagGCa -3' miRNA: 3'- -CAGCCGG-----GGG-CCGUG--------CCGCGGUuaCG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 37493 | 0.66 | 0.274664 |
Target: 5'- cGUCGGCguaggcggagcgcaCUCCGGCggucagugccucaGCGGCGCUaucGAUGg -3' miRNA: 3'- -CAGCCG--------------GGGGCCG-------------UGCCGCGG---UUACg -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 36850 | 0.66 | 0.270622 |
Target: 5'- cGUCGGCaggCUCCGGCucaggcucCGGCGUCg--GCu -3' miRNA: 3'- -CAGCCG---GGGGCCGu-------GCCGCGGuuaCG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 30299 | 0.66 | 0.270622 |
Target: 5'- cGUCGG-CCCCGGCGu--UGCCGuUGCg -3' miRNA: 3'- -CAGCCgGGGGCCGUgccGCGGUuACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 23954 | 0.66 | 0.269954 |
Target: 5'- --gGGCUUCCGGCGgguacugccacagUGGCGCCuucacgGCg -3' miRNA: 3'- cagCCGGGGGCCGU-------------GCCGCGGuua---CG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 25726 | 0.66 | 0.257498 |
Target: 5'- -cCGGCgucaCCCCGGaacacgccaUACGGCGCCca-GCg -3' miRNA: 3'- caGCCG----GGGGCC---------GUGCCGCGGuuaCG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 20425 | 0.66 | 0.257498 |
Target: 5'- uUCGGCUUCCGGgGugacCGGCGUCA--GCu -3' miRNA: 3'- cAGCCGGGGGCCgU----GCCGCGGUuaCG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 22696 | 0.66 | 0.257498 |
Target: 5'- aGUCGGCaacccgcuaCCgGGCGCGuCGCUgAGUGCc -3' miRNA: 3'- -CAGCCGg--------GGgCCGUGCcGCGG-UUACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 34692 | 0.67 | 0.241219 |
Target: 5'- cGUCGGCUcgaaCCCGGCAagcugggcguucaguCGGuCGCgGAgcuUGCg -3' miRNA: 3'- -CAGCCGG----GGGCCGU---------------GCC-GCGgUU---ACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 13725 | 0.67 | 0.221236 |
Target: 5'- uGUCGGCgCCgaccgcauaGGCGCGaGuCGCCAuUGCc -3' miRNA: 3'- -CAGCCGgGGg--------CCGUGC-C-GCGGUuACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 25480 | 0.67 | 0.221236 |
Target: 5'- cGUCGaGCCCgaaCCGGUcgGCGGCGUagucgGCg -3' miRNA: 3'- -CAGC-CGGG---GGCCG--UGCCGCGguua-CG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 19931 | 1.11 | 0.000086 |
Target: 5'- cGUCGGCCCCCGGCACGGCGCCAAUGCg -3' miRNA: 3'- -CAGCCGGGGGCCGUGCCGCGGUUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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