Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8107 | 5' | -62.9 | NC_001978.2 | + | 36550 | 0.72 | 0.107748 |
Target: 5'- uGUCGGCUCaugaCUGGguCGGCGUggCAGUGCa -3' miRNA: 3'- -CAGCCGGG----GGCCguGCCGCG--GUUACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 25616 | 0.66 | 0.291311 |
Target: 5'- cGUUGGCUgagccugaagaaCCCGgacgggcagcGCugGGCGCCGuaugGCg -3' miRNA: 3'- -CAGCCGG------------GGGC----------CGugCCGCGGUua--CG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 21884 | 0.66 | 0.291311 |
Target: 5'- cGUCGGUuaUCGGCAUGcUGCCGAaGCa -3' miRNA: 3'- -CAGCCGggGGCCGUGCcGCGGUUaCG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 36377 | 0.66 | 0.290602 |
Target: 5'- aUgGGCauggUCCGGCugGGUGCUgggcuugaucguuGAUGCg -3' miRNA: 3'- cAgCCGg---GGGCCGugCCGCGG-------------UUACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 26301 | 0.66 | 0.28428 |
Target: 5'- ---cGCCaUgGGCGCGGCGCUuGUGCu -3' miRNA: 3'- cagcCGGgGgCCGUGCCGCGGuUACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 9011 | 0.66 | 0.28428 |
Target: 5'- aUC-GCCgUCGGCAuUGGCGCCGGUaucGCu -3' miRNA: 3'- cAGcCGGgGGCCGU-GCCGCGGUUA---CG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 27352 | 0.66 | 0.257498 |
Target: 5'- uUUGGUCCCggaaGGCguuuuACGGCGCCAuggaagaGCg -3' miRNA: 3'- cAGCCGGGGg---CCG-----UGCCGCGGUua-----CG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 14164 | 0.66 | 0.257498 |
Target: 5'- gGUCGGCUaucgggCgCGGCAUGGUGUCcg-GCa -3' miRNA: 3'- -CAGCCGG------GgGCCGUGCCGCGGuuaCG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 12136 | 0.68 | 0.194427 |
Target: 5'- gGUCGG-CUCCGGCACGGUccuuaucgggGgCAcgGCu -3' miRNA: 3'- -CAGCCgGGGGCCGUGCCG----------CgGUuaCG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 17248 | 0.69 | 0.170503 |
Target: 5'- aGUCGGCgcacuaCCCGcGCACGGCuUCGuGUGCg -3' miRNA: 3'- -CAGCCGg-----GGGC-CGUGCCGcGGU-UACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 37796 | 0.69 | 0.161693 |
Target: 5'- aUgGGUCaCCCaGCAUGGCGCCcagGCg -3' miRNA: 3'- cAgCCGG-GGGcCGUGCCGCGGuuaCG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 19318 | 0.7 | 0.153295 |
Target: 5'- -aUGGCuuCCCCGGCguGCGGCGgCAAccggGCa -3' miRNA: 3'- caGCCG--GGGGCCG--UGCCGCgGUUa---CG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 17317 | 0.71 | 0.116976 |
Target: 5'- gGUCGGCguaUCCGGCGguCGGCGCUcaGGUGUu -3' miRNA: 3'- -CAGCCGg--GGGCCGU--GCCGCGG--UUACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 20425 | 0.66 | 0.257498 |
Target: 5'- uUCGGCUUCCGGgGugacCGGCGUCA--GCu -3' miRNA: 3'- cAGCCGGGGGCCgU----GCCGCGGUuaCG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 25726 | 0.66 | 0.257498 |
Target: 5'- -cCGGCgucaCCCCGGaacacgccaUACGGCGCCca-GCg -3' miRNA: 3'- caGCCG----GGGGCC---------GUGCCGCGGuuaCG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 23954 | 0.66 | 0.269954 |
Target: 5'- --gGGCUUCCGGCGgguacugccacagUGGCGCCuucacgGCg -3' miRNA: 3'- cagCCGGGGGCCGU-------------GCCGCGGuua---CG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 30299 | 0.66 | 0.270622 |
Target: 5'- cGUCGG-CCCCGGCGu--UGCCGuUGCg -3' miRNA: 3'- -CAGCCgGGGGCCGUgccGCGGUuACG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 36850 | 0.66 | 0.270622 |
Target: 5'- cGUCGGCaggCUCCGGCucaggcucCGGCGUCg--GCu -3' miRNA: 3'- -CAGCCG---GGGGCCGu-------GCCGCGGuuaCG- -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 37493 | 0.66 | 0.274664 |
Target: 5'- cGUCGGCguaggcggagcgcaCUCCGGCggucagugccucaGCGGCGCUaucGAUGg -3' miRNA: 3'- -CAGCCG--------------GGGGCCG-------------UGCCGCGG---UUACg -5' |
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8107 | 5' | -62.9 | NC_001978.2 | + | 19931 | 1.11 | 0.000086 |
Target: 5'- cGUCGGCCCCCGGCACGGCGCCAAUGCg -3' miRNA: 3'- -CAGCCGGGGGCCGUGCCGCGGUUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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