miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8107 5' -62.9 NC_001978.2 + 3599 0.78 0.034986
Target:  5'- -aCaGCgCCCGGCAUGGCGCCAuugGCa -3'
miRNA:   3'- caGcCGgGGGCCGUGCCGCGGUua-CG- -5'
8107 5' -62.9 NC_001978.2 + 5702 0.68 0.194427
Target:  5'- cGUCaGCCUCaccgaaGGCAgcguUGGCGCCGGUcGCg -3'
miRNA:   3'- -CAGcCGGGGg-----CCGU----GCCGCGGUUA-CG- -5'
8107 5' -62.9 NC_001978.2 + 8930 0.71 0.126592
Target:  5'- gGUCGagccacagcGCCCCCuuacgucaugacgGGCguGCGGCGCuCAGUGCc -3'
miRNA:   3'- -CAGC---------CGGGGG-------------CCG--UGCCGCG-GUUACG- -5'
8107 5' -62.9 NC_001978.2 + 9011 0.66 0.28428
Target:  5'- aUC-GCCgUCGGCAuUGGCGCCGGUaucGCu -3'
miRNA:   3'- cAGcCGGgGGCCGU-GCCGCGGUUA---CG- -5'
8107 5' -62.9 NC_001978.2 + 9104 0.69 0.161263
Target:  5'- -cCGGCuUCCCGcucaagcgccucaGCGauacCGGCGCCAAUGCc -3'
miRNA:   3'- caGCCG-GGGGC-------------CGU----GCCGCGGUUACG- -5'
8107 5' -62.9 NC_001978.2 + 12136 0.68 0.194427
Target:  5'- gGUCGG-CUCCGGCACGGUccuuaucgggGgCAcgGCu -3'
miRNA:   3'- -CAGCCgGGGGCCGUGCCG----------CgGUuaCG- -5'
8107 5' -62.9 NC_001978.2 + 13725 0.67 0.221236
Target:  5'- uGUCGGCgCCgaccgcauaGGCGCGaGuCGCCAuUGCc -3'
miRNA:   3'- -CAGCCGgGGg--------CCGUGC-C-GCGGUuACG- -5'
8107 5' -62.9 NC_001978.2 + 14164 0.66 0.257498
Target:  5'- gGUCGGCUaucgggCgCGGCAUGGUGUCcg-GCa -3'
miRNA:   3'- -CAGCCGG------GgGCCGUGCCGCGGuuaCG- -5'
8107 5' -62.9 NC_001978.2 + 14556 0.69 0.166046
Target:  5'- cGUCgGGCCUuCCGGUaACGGUGCUGAaGCu -3'
miRNA:   3'- -CAG-CCGGG-GGCCG-UGCCGCGGUUaCG- -5'
8107 5' -62.9 NC_001978.2 + 17248 0.69 0.170503
Target:  5'- aGUCGGCgcacuaCCCGcGCACGGCuUCGuGUGCg -3'
miRNA:   3'- -CAGCCGg-----GGGC-CGUGCCGcGGU-UACG- -5'
8107 5' -62.9 NC_001978.2 + 17317 0.71 0.116976
Target:  5'- gGUCGGCguaUCCGGCGguCGGCGCUcaGGUGUu -3'
miRNA:   3'- -CAGCCGg--GGGCCGU--GCCGCGG--UUACG- -5'
8107 5' -62.9 NC_001978.2 + 19318 0.7 0.153295
Target:  5'- -aUGGCuuCCCCGGCguGCGGCGgCAAccggGCa -3'
miRNA:   3'- caGCCG--GGGGCCG--UGCCGCgGUUa---CG- -5'
8107 5' -62.9 NC_001978.2 + 19555 0.72 0.110746
Target:  5'- -cCGGCCgugaagggUCaCGGCACGGCGUCAccgaucGUGCg -3'
miRNA:   3'- caGCCGG--------GG-GCCGUGCCGCGGU------UACG- -5'
8107 5' -62.9 NC_001978.2 + 19931 1.11 0.000086
Target:  5'- cGUCGGCCCCCGGCACGGCGCCAAUGCg -3'
miRNA:   3'- -CAGCCGGGGGCCGUGCCGCGGUUACG- -5'
8107 5' -62.9 NC_001978.2 + 20425 0.66 0.257498
Target:  5'- uUCGGCUUCCGGgGugacCGGCGUCA--GCu -3'
miRNA:   3'- cAGCCGGGGGCCgU----GCCGCGGUuaCG- -5'
8107 5' -62.9 NC_001978.2 + 21884 0.66 0.291311
Target:  5'- cGUCGGUuaUCGGCAUGcUGCCGAaGCa -3'
miRNA:   3'- -CAGCCGggGGCCGUGCcGCGGUUaCG- -5'
8107 5' -62.9 NC_001978.2 + 22696 0.66 0.257498
Target:  5'- aGUCGGCaacccgcuaCCgGGCGCGuCGCUgAGUGCc -3'
miRNA:   3'- -CAGCCGg--------GGgCCGUGCcGCGG-UUACG- -5'
8107 5' -62.9 NC_001978.2 + 23954 0.66 0.269954
Target:  5'- --gGGCUUCCGGCGgguacugccacagUGGCGCCuucacgGCg -3'
miRNA:   3'- cagCCGGGGGCCGU-------------GCCGCGGuua---CG- -5'
8107 5' -62.9 NC_001978.2 + 25480 0.67 0.221236
Target:  5'- cGUCGaGCCCgaaCCGGUcgGCGGCGUagucgGCg -3'
miRNA:   3'- -CAGC-CGGG---GGCCG--UGCCGCGguua-CG- -5'
8107 5' -62.9 NC_001978.2 + 25616 0.66 0.291311
Target:  5'- cGUUGGCUgagccugaagaaCCCGgacgggcagcGCugGGCGCCGuaugGCg -3'
miRNA:   3'- -CAGCCGG------------GGGC----------CGugCCGCGGUua--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.