miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8107 5' -62.9 NC_001978.2 + 19931 1.11 0.000086
Target:  5'- cGUCGGCCCCCGGCACGGCGCCAAUGCg -3'
miRNA:   3'- -CAGCCGGGGGCCGUGCCGCGGUUACG- -5'
8107 5' -62.9 NC_001978.2 + 3599 0.78 0.034986
Target:  5'- -aCaGCgCCCGGCAUGGCGCCAuugGCa -3'
miRNA:   3'- caGcCGgGGGCCGUGCCGCGGUua-CG- -5'
8107 5' -62.9 NC_001978.2 + 39234 0.75 0.063495
Target:  5'- cGUCucGCCCCggguCGGCACGGCGUCAgcguccAUGCg -3'
miRNA:   3'- -CAGc-CGGGG----GCCGUGCCGCGGU------UACG- -5'
8107 5' -62.9 NC_001978.2 + 26166 0.74 0.072859
Target:  5'- cGUCGGCgCCCUGaGUgcucgacaccugaACGGCGCCGguacgGUGCg -3'
miRNA:   3'- -CAGCCG-GGGGC-CG-------------UGCCGCGGU-----UACG- -5'
8107 5' -62.9 NC_001978.2 + 36550 0.72 0.107748
Target:  5'- uGUCGGCUCaugaCUGGguCGGCGUggCAGUGCa -3'
miRNA:   3'- -CAGCCGGG----GGCCguGCCGCG--GUUACG- -5'
8107 5' -62.9 NC_001978.2 + 19555 0.72 0.110746
Target:  5'- -cCGGCCgugaagggUCaCGGCACGGCGUCAccgaucGUGCg -3'
miRNA:   3'- caGCCGG--------GG-GCCGUGCCGCGGU------UACG- -5'
8107 5' -62.9 NC_001978.2 + 17317 0.71 0.116976
Target:  5'- gGUCGGCguaUCCGGCGguCGGCGCUcaGGUGUu -3'
miRNA:   3'- -CAGCCGg--GGGCCGU--GCCGCGG--UUACG- -5'
8107 5' -62.9 NC_001978.2 + 38701 0.71 0.116976
Target:  5'- uGUUGaGCCgCCCGGCGCGGCauucGUUcagGAUGCg -3'
miRNA:   3'- -CAGC-CGG-GGGCCGUGCCG----CGG---UUACG- -5'
8107 5' -62.9 NC_001978.2 + 33646 0.71 0.118261
Target:  5'- -cCGGCCCggggucacacccgaCGGuCACGGCGCCGAcaaggGCg -3'
miRNA:   3'- caGCCGGGg-------------GCC-GUGCCGCGGUUa----CG- -5'
8107 5' -62.9 NC_001978.2 + 8930 0.71 0.126592
Target:  5'- gGUCGagccacagcGCCCCCuuacgucaugacgGGCguGCGGCGCuCAGUGCc -3'
miRNA:   3'- -CAGC---------CGGGGG-------------CCG--UGCCGCG-GUUACG- -5'
8107 5' -62.9 NC_001978.2 + 19318 0.7 0.153295
Target:  5'- -aUGGCuuCCCCGGCguGCGGCGgCAAccggGCa -3'
miRNA:   3'- caGCCG--GGGGCCG--UGCCGCgGUUa---CG- -5'
8107 5' -62.9 NC_001978.2 + 9104 0.69 0.161263
Target:  5'- -cCGGCuUCCCGcucaagcgccucaGCGauacCGGCGCCAAUGCc -3'
miRNA:   3'- caGCCG-GGGGC-------------CGU----GCCGCGGUUACG- -5'
8107 5' -62.9 NC_001978.2 + 37796 0.69 0.161693
Target:  5'- aUgGGUCaCCCaGCAUGGCGCCcagGCg -3'
miRNA:   3'- cAgCCGG-GGGcCGUGCCGCGGuuaCG- -5'
8107 5' -62.9 NC_001978.2 + 14556 0.69 0.166046
Target:  5'- cGUCgGGCCUuCCGGUaACGGUGCUGAaGCu -3'
miRNA:   3'- -CAG-CCGGG-GGCCG-UGCCGCGGUUaCG- -5'
8107 5' -62.9 NC_001978.2 + 32700 0.69 0.166046
Target:  5'- aGUCGGCCgguCCCGGUuguagGCaGCGCCGGacacGCg -3'
miRNA:   3'- -CAGCCGG---GGGCCG-----UGcCGCGGUUa---CG- -5'
8107 5' -62.9 NC_001978.2 + 17248 0.69 0.170503
Target:  5'- aGUCGGCgcacuaCCCGcGCACGGCuUCGuGUGCg -3'
miRNA:   3'- -CAGCCGg-----GGGC-CGUGCCGcGGU-UACG- -5'
8107 5' -62.9 NC_001978.2 + 30143 0.69 0.175067
Target:  5'- cGUCcGCCCaguCGGCaaaGCGuGCGCCAccAUGCg -3'
miRNA:   3'- -CAGcCGGGg--GCCG---UGC-CGCGGU--UACG- -5'
8107 5' -62.9 NC_001978.2 + 32362 0.68 0.189418
Target:  5'- uUCGGCUCaguaGGCACGGCGC--GUGa -3'
miRNA:   3'- cAGCCGGGgg--CCGUGCCGCGguUACg -5'
8107 5' -62.9 NC_001978.2 + 5702 0.68 0.194427
Target:  5'- cGUCaGCCUCaccgaaGGCAgcguUGGCGCCGGUcGCg -3'
miRNA:   3'- -CAGcCGGGGg-----CCGU----GCCGCGGUUA-CG- -5'
8107 5' -62.9 NC_001978.2 + 12136 0.68 0.194427
Target:  5'- gGUCGG-CUCCGGCACGGUccuuaucgggGgCAcgGCu -3'
miRNA:   3'- -CAGCCgGGGGCCGUGCCG----------CgGUuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.