miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8107 5' -62.9 NC_001978.2 + 39234 0.75 0.063495
Target:  5'- cGUCucGCCCCggguCGGCACGGCGUCAgcguccAUGCg -3'
miRNA:   3'- -CAGc-CGGGG----GCCGUGCCGCGGU------UACG- -5'
8107 5' -62.9 NC_001978.2 + 38701 0.71 0.116976
Target:  5'- uGUUGaGCCgCCCGGCGCGGCauucGUUcagGAUGCg -3'
miRNA:   3'- -CAGC-CGG-GGGCCGUGCCG----CGG---UUACG- -5'
8107 5' -62.9 NC_001978.2 + 37796 0.69 0.161693
Target:  5'- aUgGGUCaCCCaGCAUGGCGCCcagGCg -3'
miRNA:   3'- cAgCCGG-GGGcCGUGCCGCGGuuaCG- -5'
8107 5' -62.9 NC_001978.2 + 37493 0.66 0.274664
Target:  5'- cGUCGGCguaggcggagcgcaCUCCGGCggucagugccucaGCGGCGCUaucGAUGg -3'
miRNA:   3'- -CAGCCG--------------GGGGCCG-------------UGCCGCGG---UUACg -5'
8107 5' -62.9 NC_001978.2 + 36850 0.66 0.270622
Target:  5'- cGUCGGCaggCUCCGGCucaggcucCGGCGUCg--GCu -3'
miRNA:   3'- -CAGCCG---GGGGCCGu-------GCCGCGGuuaCG- -5'
8107 5' -62.9 NC_001978.2 + 36550 0.72 0.107748
Target:  5'- uGUCGGCUCaugaCUGGguCGGCGUggCAGUGCa -3'
miRNA:   3'- -CAGCCGGG----GGCCguGCCGCG--GUUACG- -5'
8107 5' -62.9 NC_001978.2 + 36377 0.66 0.290602
Target:  5'- aUgGGCauggUCCGGCugGGUGCUgggcuugaucguuGAUGCg -3'
miRNA:   3'- cAgCCGg---GGGCCGugCCGCGG-------------UUACG- -5'
8107 5' -62.9 NC_001978.2 + 34692 0.67 0.241219
Target:  5'- cGUCGGCUcgaaCCCGGCAagcugggcguucaguCGGuCGCgGAgcuUGCg -3'
miRNA:   3'- -CAGCCGG----GGGCCGU---------------GCC-GCGgUU---ACG- -5'
8107 5' -62.9 NC_001978.2 + 33646 0.71 0.118261
Target:  5'- -cCGGCCCggggucacacccgaCGGuCACGGCGCCGAcaaggGCg -3'
miRNA:   3'- caGCCGGGg-------------GCC-GUGCCGCGGUUa----CG- -5'
8107 5' -62.9 NC_001978.2 + 33282 0.68 0.199551
Target:  5'- aGUCGGCauguCCUGaacggaGUugGGCGCUAcgGCg -3'
miRNA:   3'- -CAGCCGg---GGGC------CGugCCGCGGUuaCG- -5'
8107 5' -62.9 NC_001978.2 + 32700 0.69 0.166046
Target:  5'- aGUCGGCCgguCCCGGUuguagGCaGCGCCGGacacGCg -3'
miRNA:   3'- -CAGCCGG---GGGCCG-----UGcCGCGGUUa---CG- -5'
8107 5' -62.9 NC_001978.2 + 32362 0.68 0.189418
Target:  5'- uUCGGCUCaguaGGCACGGCGC--GUGa -3'
miRNA:   3'- cAGCCGGGgg--CCGUGCCGCGguUACg -5'
8107 5' -62.9 NC_001978.2 + 30299 0.66 0.270622
Target:  5'- cGUCGG-CCCCGGCGu--UGCCGuUGCg -3'
miRNA:   3'- -CAGCCgGGGGCCGUgccGCGGUuACG- -5'
8107 5' -62.9 NC_001978.2 + 30143 0.69 0.175067
Target:  5'- cGUCcGCCCaguCGGCaaaGCGuGCGCCAccAUGCg -3'
miRNA:   3'- -CAGcCGGGg--GCCG---UGC-CGCGGU--UACG- -5'
8107 5' -62.9 NC_001978.2 + 28290 0.66 0.28428
Target:  5'- cGUCGGCCggaugCUCaGGCGCgcguguucGGCGUCAagGCa -3'
miRNA:   3'- -CAGCCGG-----GGG-CCGUG--------CCGCGGUuaCG- -5'
8107 5' -62.9 NC_001978.2 + 27352 0.66 0.257498
Target:  5'- uUUGGUCCCggaaGGCguuuuACGGCGCCAuggaagaGCg -3'
miRNA:   3'- cAGCCGGGGg---CCG-----UGCCGCGGUua-----CG- -5'
8107 5' -62.9 NC_001978.2 + 26301 0.66 0.28428
Target:  5'- ---cGCCaUgGGCGCGGCGCUuGUGCu -3'
miRNA:   3'- cagcCGGgGgCCGUGCCGCGGuUACG- -5'
8107 5' -62.9 NC_001978.2 + 26166 0.74 0.072859
Target:  5'- cGUCGGCgCCCUGaGUgcucgacaccugaACGGCGCCGguacgGUGCg -3'
miRNA:   3'- -CAGCCG-GGGGC-CG-------------UGCCGCGGU-----UACG- -5'
8107 5' -62.9 NC_001978.2 + 25726 0.66 0.257498
Target:  5'- -cCGGCgucaCCCCGGaacacgccaUACGGCGCCca-GCg -3'
miRNA:   3'- caGCCG----GGGGCC---------GUGCCGCGGuuaCG- -5'
8107 5' -62.9 NC_001978.2 + 25616 0.66 0.291311
Target:  5'- cGUUGGCUgagccugaagaaCCCGgacgggcagcGCugGGCGCCGuaugGCg -3'
miRNA:   3'- -CAGCCGG------------GGGC----------CGugCCGCGGUua--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.