miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8110 3' -53.8 NC_001978.2 + 17096 0.68 0.593753
Target:  5'- cGCGaagGCCGagGUCGGCuaucACGAaggccGGUCGg -3'
miRNA:   3'- -CGCga-CGGUa-CAGCCGu---UGCU-----UCAGC- -5'
8110 3' -53.8 NC_001978.2 + 21989 0.66 0.739098
Target:  5'- uCGCUGCCAUcUUGGCuugccACGggG-Ca -3'
miRNA:   3'- cGCGACGGUAcAGCCGu----UGCuuCaGc -5'
8110 3' -53.8 NC_001978.2 + 22035 1.12 0.000634
Target:  5'- cGCGCUGCCAUGUCGGCAACGAAGUCGa -3'
miRNA:   3'- -CGCGACGGUACAGCCGUUGCUUCAGC- -5'
8110 3' -53.8 NC_001978.2 + 22113 0.69 0.538093
Target:  5'- uCGCUGCCcagGUCGGC-GCGAAccuUCGu -3'
miRNA:   3'- cGCGACGGua-CAGCCGuUGCUUc--AGC- -5'
8110 3' -53.8 NC_001978.2 + 23859 0.8 0.125236
Target:  5'- aGCGCUGCCAcuaGUCGGCAaucGCGucGUUGu -3'
miRNA:   3'- -CGCGACGGUa--CAGCCGU---UGCuuCAGC- -5'
8110 3' -53.8 NC_001978.2 + 24557 0.67 0.650251
Target:  5'- aGUGUucaaUGCguUcGUCGGCGGCGucauGGUCGg -3'
miRNA:   3'- -CGCG----ACGguA-CAGCCGUUGCu---UCAGC- -5'
8110 3' -53.8 NC_001978.2 + 25485 0.68 0.571323
Target:  5'- gGCGaCgucgaGCCcgaaccgGUCGGCGGCGuAGUCGg -3'
miRNA:   3'- -CGC-Ga----CGGua-----CAGCCGUUGCuUCAGC- -5'
8110 3' -53.8 NC_001978.2 + 25723 0.66 0.739098
Target:  5'- cGCGCucacUGCCGUaucgGUCGGCuauGACGccGUUGc -3'
miRNA:   3'- -CGCG----ACGGUA----CAGCCG---UUGCuuCAGC- -5'
8110 3' -53.8 NC_001978.2 + 26606 0.66 0.739098
Target:  5'- aUGCUGaCCuUGUCGGCuacauGCGucggcuuGUCGg -3'
miRNA:   3'- cGCGAC-GGuACAGCCGu----UGCuu-----CAGC- -5'
8110 3' -53.8 NC_001978.2 + 28380 0.7 0.473883
Target:  5'- cCGCUGCCAUGUgGGguGuCGAcuccGUCa -3'
miRNA:   3'- cGCGACGGUACAgCCguU-GCUu---CAGc -5'
8110 3' -53.8 NC_001978.2 + 28733 0.67 0.66605
Target:  5'- aCGCUGCCGUcGUCGGauugGAUGAuucgccgcgcgauuGUCGg -3'
miRNA:   3'- cGCGACGGUA-CAGCCg---UUGCUu-------------CAGC- -5'
8110 3' -53.8 NC_001978.2 + 28885 0.66 0.728261
Target:  5'- aGCGCUGCCAacaCGcGCAuuuCGAuugccugaaAGUCGa -3'
miRNA:   3'- -CGCGACGGUacaGC-CGUu--GCU---------UCAGC- -5'
8110 3' -53.8 NC_001978.2 + 28967 0.66 0.728261
Target:  5'- aGgGC-GCCGgauUCGGCAaggucuacggggGCGGAGUCGc -3'
miRNA:   3'- -CgCGaCGGUac-AGCCGU------------UGCUUCAGC- -5'
8110 3' -53.8 NC_001978.2 + 30041 0.74 0.300936
Target:  5'- cGCGCUcagcggcaaGCCG-GUCGGCAAgGucGUCGg -3'
miRNA:   3'- -CGCGA---------CGGUaCAGCCGUUgCuuCAGC- -5'
8110 3' -53.8 NC_001978.2 + 30392 0.66 0.705188
Target:  5'- cGCGUggcagggUGCCGUGUCGcuCGACaAGGUCa -3'
miRNA:   3'- -CGCG-------ACGGUACAGCc-GUUGcUUCAGc -5'
8110 3' -53.8 NC_001978.2 + 30520 0.69 0.549103
Target:  5'- aGUGCUuagCGUGUCGGCAAgGGAaccGUCGg -3'
miRNA:   3'- -CGCGAcg-GUACAGCCGUUgCUU---CAGC- -5'
8110 3' -53.8 NC_001978.2 + 30856 0.67 0.638943
Target:  5'- cGCGCgaaucgGCCAUG-CGGUcgucACGAAcGUCa -3'
miRNA:   3'- -CGCGa-----CGGUACaGCCGu---UGCUU-CAGc -5'
8110 3' -53.8 NC_001978.2 + 34287 0.68 0.609539
Target:  5'- cGCGUUGCgcuCAgcgugGUCGGCAAcacaguucgcauaguCGGAGUUGg -3'
miRNA:   3'- -CGCGACG---GUa----CAGCCGUU---------------GCUUCAGC- -5'
8110 3' -53.8 NC_001978.2 + 35238 0.68 0.582516
Target:  5'- -gGUUGCCGcUGUggagUGGguACGGAGUCGc -3'
miRNA:   3'- cgCGACGGU-ACA----GCCguUGCUUCAGC- -5'
8110 3' -53.8 NC_001978.2 + 35604 0.68 0.605024
Target:  5'- gGCGCUGagugaGUCGGCAGCGGGuaugccGUCu -3'
miRNA:   3'- -CGCGACggua-CAGCCGUUGCUU------CAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.