Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8110 | 3' | -53.8 | NC_001978.2 | + | 4476 | 0.66 | 0.728261 |
Target: 5'- aCGCUGCgA-GUCGGCGAagaccgUGAAGgCGg -3' miRNA: 3'- cGCGACGgUaCAGCCGUU------GCUUCaGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 6801 | 0.72 | 0.38 |
Target: 5'- uGCGCUGCCgugaacgccgaccuuGUGUCGGUccCGggGcUCa -3' miRNA: 3'- -CGCGACGG---------------UACAGCCGuuGCuuC-AGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 6903 | 0.68 | 0.605024 |
Target: 5'- aGCGCUcuaacgGuCCGUGUgCGGguGCGcGGUCGc -3' miRNA: 3'- -CGCGA------C-GGUACA-GCCguUGCuUCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 8812 | 0.73 | 0.30871 |
Target: 5'- aGCGC-GCCG-GUCGGgGGCGAAG-CGg -3' miRNA: 3'- -CGCGaCGGUaCAGCCgUUGCUUCaGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 9809 | 0.67 | 0.638943 |
Target: 5'- aCGCUggGCaagGUCGacggcGCGGCGAAGUCGg -3' miRNA: 3'- cGCGA--CGguaCAGC-----CGUUGCUUCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 10522 | 0.67 | 0.661541 |
Target: 5'- ----aGCCG-GUCGGCGACGAAGa-- -3' miRNA: 3'- cgcgaCGGUaCAGCCGUUGCUUCagc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 10617 | 0.69 | 0.51631 |
Target: 5'- uCGCauCC-UGUCGGCAGCGucGUCGu -3' miRNA: 3'- cGCGacGGuACAGCCGUUGCuuCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 12259 | 0.66 | 0.739098 |
Target: 5'- uGCGCgGCUgacgacGUCGGCAGCGGA--CGg -3' miRNA: 3'- -CGCGaCGGua----CAGCCGUUGCUUcaGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 12325 | 0.67 | 0.672803 |
Target: 5'- cCGCUGCCGacGUCGucagccgcGCAACGAucaAGUCc -3' miRNA: 3'- cGCGACGGUa-CAGC--------CGUUGCU---UCAGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 12408 | 0.71 | 0.443242 |
Target: 5'- cGCGUuguccgGCCGUGUCGGgaccguCGGCGAAG-CGg -3' miRNA: 3'- -CGCGa-----CGGUACAGCC------GUUGCUUCaGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 12496 | 0.73 | 0.316636 |
Target: 5'- aGUGCUGCCGUcuccGUCGGCGuucccGGUCGg -3' miRNA: 3'- -CGCGACGGUA----CAGCCGUugcu-UCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 12832 | 0.71 | 0.40419 |
Target: 5'- cGCGUaaUGCCG-GUCGGCAGCGucGcCa -3' miRNA: 3'- -CGCG--ACGGUaCAGCCGUUGCuuCaGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 13098 | 0.69 | 0.538093 |
Target: 5'- aCGCUGCCG-GUaCGGCGACGGuAGg-- -3' miRNA: 3'- cGCGACGGUaCA-GCCGUUGCU-UCagc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 13196 | 0.66 | 0.706295 |
Target: 5'- aGCG-UGUCGggGUCGGCAGCGucGAG-CGg -3' miRNA: 3'- -CGCgACGGUa-CAGCCGUUGC--UUCaGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 13735 | 0.73 | 0.332945 |
Target: 5'- cCGUUGCCGuUGUCGGCGccgaccgcauagGCGcGAGUCGc -3' miRNA: 3'- cGCGACGGU-ACAGCCGU------------UGC-UUCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 14176 | 0.72 | 0.385495 |
Target: 5'- gGCGCgGCaugGUGUcCGGCAACGuguGGUCa -3' miRNA: 3'- -CGCGaCGg--UACA-GCCGUUGCu--UCAGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 15586 | 0.69 | 0.527159 |
Target: 5'- cGCGCUGggacCCggGaCGGCAACGuacGUCGg -3' miRNA: 3'- -CGCGAC----GGuaCaGCCGUUGCuu-CAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 16215 | 0.68 | 0.615189 |
Target: 5'- aGCGUggcaacGCCGgacgcaacucccuUGUCGGCAACGGGaaucgccccgacGUCGg -3' miRNA: 3'- -CGCGa-----CGGU-------------ACAGCCGUUGCUU------------CAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 16423 | 0.68 | 0.587006 |
Target: 5'- gGCGCUGggaacGUUGGCAaucggcaggcgcuucGCGGAGUCGa -3' miRNA: 3'- -CGCGACggua-CAGCCGU---------------UGCUUCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 16679 | 0.68 | 0.571323 |
Target: 5'- cGCGCUugccGCUAUG-CGGuCAACGcauGUCGg -3' miRNA: 3'- -CGCGA----CGGUACaGCC-GUUGCuu-CAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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