Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8110 | 3' | -53.8 | NC_001978.2 | + | 4476 | 0.66 | 0.728261 |
Target: 5'- aCGCUGCgA-GUCGGCGAagaccgUGAAGgCGg -3' miRNA: 3'- cGCGACGgUaCAGCCGUU------GCUUCaGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 6903 | 0.68 | 0.605024 |
Target: 5'- aGCGCUcuaacgGuCCGUGUgCGGguGCGcGGUCGc -3' miRNA: 3'- -CGCGA------C-GGUACA-GCCguUGCuUCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 36901 | 0.68 | 0.616319 |
Target: 5'- cCGCUGCCG-GUCGGCAcccugccaccuGCGGaagaAGUUc -3' miRNA: 3'- cGCGACGGUaCAGCCGU-----------UGCU----UCAGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 9809 | 0.67 | 0.638943 |
Target: 5'- aCGCUggGCaagGUCGacggcGCGGCGAAGUCGg -3' miRNA: 3'- cGCGA--CGguaCAGC-----CGUUGCUUCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 24557 | 0.67 | 0.650251 |
Target: 5'- aGUGUucaaUGCguUcGUCGGCGGCGucauGGUCGg -3' miRNA: 3'- -CGCG----ACGguA-CAGCCGUUGCu---UCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 10522 | 0.67 | 0.661541 |
Target: 5'- ----aGCCG-GUCGGCGACGAAGa-- -3' miRNA: 3'- cgcgaCGGUaCAGCCGUUGCUUCagc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 28733 | 0.67 | 0.66605 |
Target: 5'- aCGCUGCCGUcGUCGGauugGAUGAuucgccgcgcgauuGUCGg -3' miRNA: 3'- cGCGACGGUA-CAGCCg---UUGCUu-------------CAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 30392 | 0.66 | 0.705188 |
Target: 5'- cGCGUggcagggUGCCGUGUCGcuCGACaAGGUCa -3' miRNA: 3'- -CGCG-------ACGGUACAGCc-GUUGcUUCAGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 28967 | 0.66 | 0.728261 |
Target: 5'- aGgGC-GCCGgauUCGGCAaggucuacggggGCGGAGUCGc -3' miRNA: 3'- -CgCGaCGGUac-AGCCGU------------UGCUUCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 17096 | 0.68 | 0.593753 |
Target: 5'- cGCGaagGCCGagGUCGGCuaucACGAaggccGGUCGg -3' miRNA: 3'- -CGCga-CGGUa-CAGCCGu---UGCU-----UCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 35238 | 0.68 | 0.582516 |
Target: 5'- -gGUUGCCGcUGUggagUGGguACGGAGUCGc -3' miRNA: 3'- cgCGACGGU-ACA----GCCguUGCUUCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 16679 | 0.68 | 0.571323 |
Target: 5'- cGCGCUugccGCUAUG-CGGuCAACGcauGUCGg -3' miRNA: 3'- -CGCGA----CGGUACaGCC-GUUGCuu-CAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 12496 | 0.73 | 0.316636 |
Target: 5'- aGUGCUGCCGUcuccGUCGGCGuucccGGUCGg -3' miRNA: 3'- -CGCGACGGUA----CAGCCGUugcu-UCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 6801 | 0.72 | 0.38 |
Target: 5'- uGCGCUGCCgugaacgccgaccuuGUGUCGGUccCGggGcUCa -3' miRNA: 3'- -CGCGACGG---------------UACAGCCGuuGCuuC-AGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 14176 | 0.72 | 0.385495 |
Target: 5'- gGCGCgGCaugGUGUcCGGCAACGuguGGUCa -3' miRNA: 3'- -CGCGaCGg--UACA-GCCGUUGCu--UCAGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 28380 | 0.7 | 0.473883 |
Target: 5'- cCGCUGCCAUGUgGGguGuCGAcuccGUCa -3' miRNA: 3'- cGCGACGGUACAgCCguU-GCUu---CAGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 10617 | 0.69 | 0.51631 |
Target: 5'- uCGCauCC-UGUCGGCAGCGucGUCGu -3' miRNA: 3'- cGCGacGGuACAGCCGUUGCuuCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 13098 | 0.69 | 0.538093 |
Target: 5'- aCGCUGCCG-GUaCGGCGACGGuAGg-- -3' miRNA: 3'- cGCGACGGUaCA-GCCGUUGCU-UCagc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 36541 | 0.69 | 0.538093 |
Target: 5'- -gGCUGagCGUGUCGGCucAUGAcugGGUCGg -3' miRNA: 3'- cgCGACg-GUACAGCCGu-UGCU---UCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 35725 | 0.68 | 0.570207 |
Target: 5'- aCGCUGCCGcGccaugcgaagcccUUGGCAACGccGUCGc -3' miRNA: 3'- cGCGACGGUaC-------------AGCCGUUGCuuCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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