miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8110 3' -53.8 NC_001978.2 + 22035 1.12 0.000634
Target:  5'- cGCGCUGCCAUGUCGGCAACGAAGUCGa -3'
miRNA:   3'- -CGCGACGGUACAGCCGUUGCUUCAGC- -5'
8110 3' -53.8 NC_001978.2 + 23859 0.8 0.125236
Target:  5'- aGCGCUGCCAcuaGUCGGCAaucGCGucGUUGu -3'
miRNA:   3'- -CGCGACGGUa--CAGCCGU---UGCuuCAGC- -5'
8110 3' -53.8 NC_001978.2 + 30041 0.74 0.300936
Target:  5'- cGCGCUcagcggcaaGCCG-GUCGGCAAgGucGUCGg -3'
miRNA:   3'- -CGCGA---------CGGUaCAGCCGUUgCuuCAGC- -5'
8110 3' -53.8 NC_001978.2 + 8812 0.73 0.30871
Target:  5'- aGCGC-GCCG-GUCGGgGGCGAAG-CGg -3'
miRNA:   3'- -CGCGaCGGUaCAGCCgUUGCUUCaGC- -5'
8110 3' -53.8 NC_001978.2 + 12496 0.73 0.316636
Target:  5'- aGUGCUGCCGUcuccGUCGGCGuucccGGUCGg -3'
miRNA:   3'- -CGCGACGGUA----CAGCCGUugcu-UCAGC- -5'
8110 3' -53.8 NC_001978.2 + 13735 0.73 0.332945
Target:  5'- cCGUUGCCGuUGUCGGCGccgaccgcauagGCGcGAGUCGc -3'
miRNA:   3'- cGCGACGGU-ACAGCCGU------------UGC-UUCAGC- -5'
8110 3' -53.8 NC_001978.2 + 6801 0.72 0.38
Target:  5'- uGCGCUGCCgugaacgccgaccuuGUGUCGGUccCGggGcUCa -3'
miRNA:   3'- -CGCGACGG---------------UACAGCCGuuGCuuC-AGc -5'
8110 3' -53.8 NC_001978.2 + 14176 0.72 0.385495
Target:  5'- gGCGCgGCaugGUGUcCGGCAACGuguGGUCa -3'
miRNA:   3'- -CGCGaCGg--UACA-GCCGUUGCu--UCAGc -5'
8110 3' -53.8 NC_001978.2 + 12832 0.71 0.40419
Target:  5'- cGCGUaaUGCCG-GUCGGCAGCGucGcCa -3'
miRNA:   3'- -CGCG--ACGGUaCAGCCGUUGCuuCaGc -5'
8110 3' -53.8 NC_001978.2 + 35799 0.71 0.413749
Target:  5'- gGCGUUGCCAagggcuucgcaUGgcgCGGCAGCGuggccguGUCGu -3'
miRNA:   3'- -CGCGACGGU-----------ACa--GCCGUUGCuu-----CAGC- -5'
8110 3' -53.8 NC_001978.2 + 12408 0.71 0.443242
Target:  5'- cGCGUuguccgGCCGUGUCGGgaccguCGGCGAAG-CGg -3'
miRNA:   3'- -CGCGa-----CGGUACAGCC------GUUGCUUCaGC- -5'
8110 3' -53.8 NC_001978.2 + 28380 0.7 0.473883
Target:  5'- cCGCUGCCAUGUgGGguGuCGAcuccGUCa -3'
miRNA:   3'- cGCGACGGUACAgCCguU-GCUu---CAGc -5'
8110 3' -53.8 NC_001978.2 + 10617 0.69 0.51631
Target:  5'- uCGCauCC-UGUCGGCAGCGucGUCGu -3'
miRNA:   3'- cGCGacGGuACAGCCGUUGCuuCAGC- -5'
8110 3' -53.8 NC_001978.2 + 15586 0.69 0.527159
Target:  5'- cGCGCUGggacCCggGaCGGCAACGuacGUCGg -3'
miRNA:   3'- -CGCGAC----GGuaCaGCCGUUGCuu-CAGC- -5'
8110 3' -53.8 NC_001978.2 + 22113 0.69 0.538093
Target:  5'- uCGCUGCCcagGUCGGC-GCGAAccuUCGu -3'
miRNA:   3'- cGCGACGGua-CAGCCGuUGCUUc--AGC- -5'
8110 3' -53.8 NC_001978.2 + 13098 0.69 0.538093
Target:  5'- aCGCUGCCG-GUaCGGCGACGGuAGg-- -3'
miRNA:   3'- cGCGACGGUaCA-GCCGUUGCU-UCagc -5'
8110 3' -53.8 NC_001978.2 + 36541 0.69 0.538093
Target:  5'- -gGCUGagCGUGUCGGCucAUGAcugGGUCGg -3'
miRNA:   3'- cgCGACg-GUACAGCCGu-UGCU---UCAGC- -5'
8110 3' -53.8 NC_001978.2 + 30520 0.69 0.549103
Target:  5'- aGUGCUuagCGUGUCGGCAAgGGAaccGUCGg -3'
miRNA:   3'- -CGCGAcg-GUACAGCCGUUgCUU---CAGC- -5'
8110 3' -53.8 NC_001978.2 + 35725 0.68 0.570207
Target:  5'- aCGCUGCCGcGccaugcgaagcccUUGGCAACGccGUCGc -3'
miRNA:   3'- cGCGACGGUaC-------------AGCCGUUGCuuCAGC- -5'
8110 3' -53.8 NC_001978.2 + 25485 0.68 0.571323
Target:  5'- gGCGaCgucgaGCCcgaaccgGUCGGCGGCGuAGUCGg -3'
miRNA:   3'- -CGC-Ga----CGGua-----CAGCCGUUGCuUCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.