Results 41 - 46 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8110 | 3' | -53.8 | NC_001978.2 | + | 13735 | 0.73 | 0.332945 |
|
Target: 5'- cCGUUGCCGuUGUCGGCGccgaccgcauagGCGcGAGUCGc -3' miRNA: 3'- cGCGACGGU-ACAGCCGU------------UGC-UUCAGC- -5' |
|||||||
| 8110 | 3' | -53.8 | NC_001978.2 | + | 12496 | 0.73 | 0.316636 |
|
Target: 5'- aGUGCUGCCGUcuccGUCGGCGuucccGGUCGg -3' miRNA: 3'- -CGCGACGGUA----CAGCCGUugcu-UCAGC- -5' |
|||||||
| 8110 | 3' | -53.8 | NC_001978.2 | + | 8812 | 0.73 | 0.30871 |
|
Target: 5'- aGCGC-GCCG-GUCGGgGGCGAAG-CGg -3' miRNA: 3'- -CGCGaCGGUaCAGCCgUUGCUUCaGC- -5' |
|||||||
| 8110 | 3' | -53.8 | NC_001978.2 | + | 30041 | 0.74 | 0.300936 |
|
Target: 5'- cGCGCUcagcggcaaGCCG-GUCGGCAAgGucGUCGg -3' miRNA: 3'- -CGCGA---------CGGUaCAGCCGUUgCuuCAGC- -5' |
|||||||
| 8110 | 3' | -53.8 | NC_001978.2 | + | 23859 | 0.8 | 0.125236 |
|
Target: 5'- aGCGCUGCCAcuaGUCGGCAaucGCGucGUUGu -3' miRNA: 3'- -CGCGACGGUa--CAGCCGU---UGCuuCAGC- -5' |
|||||||
| 8110 | 3' | -53.8 | NC_001978.2 | + | 22035 | 1.12 | 0.000634 |
|
Target: 5'- cGCGCUGCCAUGUCGGCAACGAAGUCGa -3' miRNA: 3'- -CGCGACGGUACAGCCGUUGCUUCAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home