Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8110 | 3' | -53.8 | NC_001978.2 | + | 6903 | 0.68 | 0.605024 |
Target: 5'- aGCGCUcuaacgGuCCGUGUgCGGguGCGcGGUCGc -3' miRNA: 3'- -CGCGA------C-GGUACA-GCCguUGCuUCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 35604 | 0.68 | 0.605024 |
Target: 5'- gGCGCUGagugaGUCGGCAGCGGGuaugccGUCu -3' miRNA: 3'- -CGCGACggua-CAGCCGUUGCUU------CAGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 17096 | 0.68 | 0.593753 |
Target: 5'- cGCGaagGCCGagGUCGGCuaucACGAaggccGGUCGg -3' miRNA: 3'- -CGCga-CGGUa-CAGCCGu---UGCU-----UCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 16423 | 0.68 | 0.587006 |
Target: 5'- gGCGCUGggaacGUUGGCAaucggcaggcgcuucGCGGAGUCGa -3' miRNA: 3'- -CGCGACggua-CAGCCGU---------------UGCUUCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 35238 | 0.68 | 0.582516 |
Target: 5'- -gGUUGCCGcUGUggagUGGguACGGAGUCGc -3' miRNA: 3'- cgCGACGGU-ACA----GCCguUGCUUCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 25485 | 0.68 | 0.571323 |
Target: 5'- gGCGaCgucgaGCCcgaaccgGUCGGCGGCGuAGUCGg -3' miRNA: 3'- -CGC-Ga----CGGua-----CAGCCGUUGCuUCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 16679 | 0.68 | 0.571323 |
Target: 5'- cGCGCUugccGCUAUG-CGGuCAACGcauGUCGg -3' miRNA: 3'- -CGCGA----CGGUACaGCC-GUUGCuu-CAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 35725 | 0.68 | 0.570207 |
Target: 5'- aCGCUGCCGcGccaugcgaagcccUUGGCAACGccGUCGc -3' miRNA: 3'- cGCGACGGUaC-------------AGCCGUUGCuuCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 30520 | 0.69 | 0.549103 |
Target: 5'- aGUGCUuagCGUGUCGGCAAgGGAaccGUCGg -3' miRNA: 3'- -CGCGAcg-GUACAGCCGUUgCUU---CAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 22113 | 0.69 | 0.538093 |
Target: 5'- uCGCUGCCcagGUCGGC-GCGAAccuUCGu -3' miRNA: 3'- cGCGACGGua-CAGCCGuUGCUUc--AGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 13098 | 0.69 | 0.538093 |
Target: 5'- aCGCUGCCG-GUaCGGCGACGGuAGg-- -3' miRNA: 3'- cGCGACGGUaCA-GCCGUUGCU-UCagc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 36541 | 0.69 | 0.538093 |
Target: 5'- -gGCUGagCGUGUCGGCucAUGAcugGGUCGg -3' miRNA: 3'- cgCGACg-GUACAGCCGu-UGCU---UCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 15586 | 0.69 | 0.527159 |
Target: 5'- cGCGCUGggacCCggGaCGGCAACGuacGUCGg -3' miRNA: 3'- -CGCGAC----GGuaCaGCCGUUGCuu-CAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 10617 | 0.69 | 0.51631 |
Target: 5'- uCGCauCC-UGUCGGCAGCGucGUCGu -3' miRNA: 3'- cGCGacGGuACAGCCGUUGCuuCAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 28380 | 0.7 | 0.473883 |
Target: 5'- cCGCUGCCAUGUgGGguGuCGAcuccGUCa -3' miRNA: 3'- cGCGACGGUACAgCCguU-GCUu---CAGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 12408 | 0.71 | 0.443242 |
Target: 5'- cGCGUuguccgGCCGUGUCGGgaccguCGGCGAAG-CGg -3' miRNA: 3'- -CGCGa-----CGGUACAGCC------GUUGCUUCaGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 35799 | 0.71 | 0.413749 |
Target: 5'- gGCGUUGCCAagggcuucgcaUGgcgCGGCAGCGuggccguGUCGu -3' miRNA: 3'- -CGCGACGGU-----------ACa--GCCGUUGCuu-----CAGC- -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 12832 | 0.71 | 0.40419 |
Target: 5'- cGCGUaaUGCCG-GUCGGCAGCGucGcCa -3' miRNA: 3'- -CGCG--ACGGUaCAGCCGUUGCuuCaGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 14176 | 0.72 | 0.385495 |
Target: 5'- gGCGCgGCaugGUGUcCGGCAACGuguGGUCa -3' miRNA: 3'- -CGCGaCGg--UACA-GCCGUUGCu--UCAGc -5' |
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8110 | 3' | -53.8 | NC_001978.2 | + | 6801 | 0.72 | 0.38 |
Target: 5'- uGCGCUGCCgugaacgccgaccuuGUGUCGGUccCGggGcUCa -3' miRNA: 3'- -CGCGACGG---------------UACAGCCGuuGCuuC-AGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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