Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8111 | 3' | -52.3 | NC_001978.2 | + | 22294 | 1.13 | 0.000777 |
Target: 5'- gACCACAUCGAACGAUCCGGCAUAGCCg -3' miRNA: 3'- -UGGUGUAGCUUGCUAGGCCGUAUCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 18501 | 0.76 | 0.267212 |
Target: 5'- -gCACGUCGAGCGAagggaaCGGCAgUGGCCu -3' miRNA: 3'- ugGUGUAGCUUGCUag----GCCGU-AUCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 25485 | 0.72 | 0.438239 |
Target: 5'- gGCgACGUCGAGCccgaaccGGUCggCGGCGUAGUCg -3' miRNA: 3'- -UGgUGUAGCUUG-------CUAG--GCCGUAUCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 1047 | 0.72 | 0.439245 |
Target: 5'- gGCCAUGUCGAGCGuguaguaacCCGGCGU-GCg -3' miRNA: 3'- -UGGUGUAGCUUGCua-------GGCCGUAuCGg -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 40639 | 0.72 | 0.480537 |
Target: 5'- cCCAgGgUUGAGCGA-CCGGCGUuGCCu -3' miRNA: 3'- uGGUgU-AGCUUGCUaGGCCGUAuCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 11651 | 0.71 | 0.501882 |
Target: 5'- gACCgGCGcCGGACGAcCCGGUA-AGCCg -3' miRNA: 3'- -UGG-UGUaGCUUGCUaGGCCGUaUCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 30466 | 0.71 | 0.512709 |
Target: 5'- gACCuuGUCGAGCGAcaCGGCAcccuGCCa -3' miRNA: 3'- -UGGugUAGCUUGCUagGCCGUau--CGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 23645 | 0.71 | 0.512709 |
Target: 5'- gACgACGUUGAGCGcgUCGGCAagggUGGCg -3' miRNA: 3'- -UGgUGUAGCUUGCuaGGCCGU----AUCGg -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 38125 | 0.71 | 0.534641 |
Target: 5'- gACCGCGaacgccauUCGAGCGucaCCGGCuc-GCCg -3' miRNA: 3'- -UGGUGU--------AGCUUGCua-GGCCGuauCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 4150 | 0.7 | 0.590739 |
Target: 5'- cCCAgcCAUUGAGCc-UCCGGCGgaagAGCCg -3' miRNA: 3'- uGGU--GUAGCUUGcuAGGCCGUa---UCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 7935 | 0.7 | 0.590739 |
Target: 5'- -gUACGUCGAGCccgGAacgCCGGUcgAGCCg -3' miRNA: 3'- ugGUGUAGCUUG---CUa--GGCCGuaUCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 9297 | 0.69 | 0.602108 |
Target: 5'- gGCCgACGUCGAAUgccguugggcaGAUgcucaaaaCCGGCAUGGCg -3' miRNA: 3'- -UGG-UGUAGCUUG-----------CUA--------GGCCGUAUCGg -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 2458 | 0.69 | 0.602108 |
Target: 5'- -aCACGUCGAGCG--CCGuGUGUAGCUc -3' miRNA: 3'- ugGUGUAGCUUGCuaGGC-CGUAUCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 11922 | 0.69 | 0.624918 |
Target: 5'- gGCCACGUCGAGCcGUCa-GCGauaAGCCc -3' miRNA: 3'- -UGGUGUAGCUUGcUAGgcCGUa--UCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 17758 | 0.69 | 0.636339 |
Target: 5'- -aCGCGUacaaGGACGGUCCGG---GGCCg -3' miRNA: 3'- ugGUGUAg---CUUGCUAGGCCguaUCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 37786 | 0.69 | 0.636339 |
Target: 5'- uGCCGC-UCGAAUGGgucacCCaGCAUGGCg -3' miRNA: 3'- -UGGUGuAGCUUGCUa----GGcCGUAUCGg -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 33106 | 0.69 | 0.66371 |
Target: 5'- -gCGCA-CGGGCGGcuucgcgggcuugcuUCCGGCcGUAGCCc -3' miRNA: 3'- ugGUGUaGCUUGCU---------------AGGCCG-UAUCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 25418 | 0.68 | 0.681866 |
Target: 5'- aGCCACAUgCGAAguCGGguuaCCGGCGc-GCCa -3' miRNA: 3'- -UGGUGUA-GCUU--GCUa---GGCCGUauCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 38251 | 0.68 | 0.715516 |
Target: 5'- cCCACccaGGGCGAuugcUCCGGCAcggggaAGCCg -3' miRNA: 3'- uGGUGuagCUUGCU----AGGCCGUa-----UCGG- -5' |
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8111 | 3' | -52.3 | NC_001978.2 | + | 25962 | 0.68 | 0.715516 |
Target: 5'- -aCGCGUCGAuacCGugcCCGGCA-AGCCc -3' miRNA: 3'- ugGUGUAGCUu--GCua-GGCCGUaUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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