miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 3' -52.3 NC_001978.2 + 18501 0.76 0.267212
Target:  5'- -gCACGUCGAGCGAagggaaCGGCAgUGGCCu -3'
miRNA:   3'- ugGUGUAGCUUGCUag----GCCGU-AUCGG- -5'
8111 3' -52.3 NC_001978.2 + 12328 0.67 0.748367
Target:  5'- uGCCGCuUCGccGACGGUCCcGaCAcGGCCg -3'
miRNA:   3'- -UGGUGuAGC--UUGCUAGGcC-GUaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 11036 0.66 0.780076
Target:  5'- cGCCugGgcgcugCGGACGucUCCGGCGUGauCCg -3'
miRNA:   3'- -UGGugUa-----GCUUGCu-AGGCCGUAUc-GG- -5'
8111 3' -52.3 NC_001978.2 + 5367 0.66 0.790332
Target:  5'- gAUCACggGUCGGGCGAccgCCGGgAUugucggcgagacGGCCg -3'
miRNA:   3'- -UGGUG--UAGCUUGCUa--GGCCgUA------------UCGG- -5'
8111 3' -52.3 NC_001978.2 + 22141 0.66 0.790332
Target:  5'- cCUACGUCGAGCacuUCCGGgAguuccugaaGGCCg -3'
miRNA:   3'- uGGUGUAGCUUGcu-AGGCCgUa--------UCGG- -5'
8111 3' -52.3 NC_001978.2 + 40127 0.66 0.80041
Target:  5'- cGCC-CAUCGAGaagcgcgcuuCGAUCacgugGGCGaAGCCg -3'
miRNA:   3'- -UGGuGUAGCUU----------GCUAGg----CCGUaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 22780 0.66 0.80041
Target:  5'- uGCCuuCGUCGucAUGAUCCugauuggcauguGGCAcGGCCa -3'
miRNA:   3'- -UGGu-GUAGCu-UGCUAGG------------CCGUaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 33460 0.66 0.80041
Target:  5'- aGCCGCAUacaCGAACaGAUCaaggaaGCAUGGCg -3'
miRNA:   3'- -UGGUGUA---GCUUG-CUAGgc----CGUAUCGg -5'
8111 3' -52.3 NC_001978.2 + 5572 0.66 0.810299
Target:  5'- cGCCACuUCcuGACGGguaCCGGCAcgGGUCa -3'
miRNA:   3'- -UGGUGuAGc-UUGCUa--GGCCGUa-UCGG- -5'
8111 3' -52.3 NC_001978.2 + 9076 0.67 0.748367
Target:  5'- uGCCGCccaGUUGGGCGcgacUCCGGCugaGGCUa -3'
miRNA:   3'- -UGGUG---UAGCUUGCu---AGGCCGua-UCGG- -5'
8111 3' -52.3 NC_001978.2 + 16115 0.67 0.744046
Target:  5'- uGCCgACGUCGGGgcgauucccguugcCGAcaagggaguugcgUCCGGCGUuGCCa -3'
miRNA:   3'- -UGG-UGUAGCUU--------------GCU-------------AGGCCGUAuCGG- -5'
8111 3' -52.3 NC_001978.2 + 37786 0.69 0.636339
Target:  5'- uGCCGC-UCGAAUGGgucacCCaGCAUGGCg -3'
miRNA:   3'- -UGGUGuAGCUUGCUa----GGcCGUAUCGg -5'
8111 3' -52.3 NC_001978.2 + 1047 0.72 0.439245
Target:  5'- gGCCAUGUCGAGCGuguaguaacCCGGCGU-GCg -3'
miRNA:   3'- -UGGUGUAGCUUGCua-------GGCCGUAuCGg -5'
8111 3' -52.3 NC_001978.2 + 40639 0.72 0.480537
Target:  5'- cCCAgGgUUGAGCGA-CCGGCGUuGCCu -3'
miRNA:   3'- uGGUgU-AGCUUGCUaGGCCGUAuCGG- -5'
8111 3' -52.3 NC_001978.2 + 11651 0.71 0.501882
Target:  5'- gACCgGCGcCGGACGAcCCGGUA-AGCCg -3'
miRNA:   3'- -UGG-UGUaGCUUGCUaGGCCGUaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 23645 0.71 0.512709
Target:  5'- gACgACGUUGAGCGcgUCGGCAagggUGGCg -3'
miRNA:   3'- -UGgUGUAGCUUGCuaGGCCGU----AUCGg -5'
8111 3' -52.3 NC_001978.2 + 7935 0.7 0.590739
Target:  5'- -gUACGUCGAGCccgGAacgCCGGUcgAGCCg -3'
miRNA:   3'- ugGUGUAGCUUG---CUa--GGCCGuaUCGG- -5'
8111 3' -52.3 NC_001978.2 + 4150 0.7 0.590739
Target:  5'- cCCAgcCAUUGAGCc-UCCGGCGgaagAGCCg -3'
miRNA:   3'- uGGU--GUAGCUUGcuAGGCCGUa---UCGG- -5'
8111 3' -52.3 NC_001978.2 + 9297 0.69 0.602108
Target:  5'- gGCCgACGUCGAAUgccguugggcaGAUgcucaaaaCCGGCAUGGCg -3'
miRNA:   3'- -UGG-UGUAGCUUG-----------CUA--------GGCCGUAUCGg -5'
8111 3' -52.3 NC_001978.2 + 17758 0.69 0.636339
Target:  5'- -aCGCGUacaaGGACGGUCCGG---GGCCg -3'
miRNA:   3'- ugGUGUAg---CUUGCUAGGCCguaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.