miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 40209 0.68 0.475864
Target:  5'- gCGGCUuCGcCCACGUgaUCGaaGCGCGCu -3'
miRNA:   3'- gGCUGGuGC-GGUGUAgaAGC--CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 8616 0.68 0.475864
Target:  5'- aCGACaUACGCCauggcgcgaaGCAUCggggcaCGGCGCGa -3'
miRNA:   3'- gGCUG-GUGCGG----------UGUAGaa----GCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 37206 0.68 0.465829
Target:  5'- aUGAUCACGUacgccgcuUGCGUCUUCGGUcccaugGCGCc -3'
miRNA:   3'- gGCUGGUGCG--------GUGUAGAAGCCG------CGCG- -5'
8111 5' -56.8 NC_001978.2 + 40008 0.68 0.465829
Target:  5'- cCCGACCG-GCCcuaaGUCguggugggGGCGCGCg -3'
miRNA:   3'- -GGCUGGUgCGGug--UAGaag-----CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 20418 0.68 0.464832
Target:  5'- gCCGACguCGCCgaagacuucaacgACAUUgaaGGCGUGCc -3'
miRNA:   3'- -GGCUGguGCGG-------------UGUAGaagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 38101 0.68 0.455905
Target:  5'- aCCGGCU-CGCCGuCGUCguccuggggCaGCGCGCa -3'
miRNA:   3'- -GGCUGGuGCGGU-GUAGaa-------GcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 12330 0.68 0.455905
Target:  5'- gCCGuCCGCuGCCgACGUCgUCaGCcGCGCa -3'
miRNA:   3'- -GGCuGGUG-CGG-UGUAGaAGcCG-CGCG- -5'
8111 5' -56.8 NC_001978.2 + 21201 0.68 0.455905
Target:  5'- gUCGACCugGgCGCGaaucacCUUCaGCGCGUc -3'
miRNA:   3'- -GGCUGGugCgGUGUa-----GAAGcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 19526 0.68 0.455905
Target:  5'- aCCGAUCguGCGCCcCAUCcaUUCGucacCGCGCg -3'
miRNA:   3'- -GGCUGG--UGCGGuGUAG--AAGCc---GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 1045 0.68 0.455905
Target:  5'- aCGGCCAUGUCgaGCGUgUaguaaccCGGCGUGCg -3'
miRNA:   3'- gGCUGGUGCGG--UGUAgAa------GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6350 0.68 0.454919
Target:  5'- aCCGAaucguuuCCgGCGUCGgGUCUUCGGcCGUGUc -3'
miRNA:   3'- -GGCU-------GG-UGCGGUgUAGAAGCC-GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 1620 0.68 0.446097
Target:  5'- gCCG-CCAaCGaCCGCaAUCa--GGCGCGCa -3'
miRNA:   3'- -GGCuGGU-GC-GGUG-UAGaagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 35871 0.68 0.446097
Target:  5'- -aGaACCuuGCCGuCGUCUUCGGCGUcagugaGCg -3'
miRNA:   3'- ggC-UGGugCGGU-GUAGAAGCCGCG------CG- -5'
8111 5' -56.8 NC_001978.2 + 15504 0.69 0.440268
Target:  5'- cCCGACUACGCCgACGUacgUUGccgucccgggucccaGCGCGUa -3'
miRNA:   3'- -GGCUGGUGCGG-UGUAga-AGC---------------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 25397 0.69 0.436407
Target:  5'- aCCGG-CGCGCCACuuaccAUCUUCGGCu--- -3'
miRNA:   3'- -GGCUgGUGCGGUG-----UAGAAGCCGcgcg -5'
8111 5' -56.8 NC_001978.2 + 31353 0.69 0.436407
Target:  5'- gCUGAUCACGUCGCcg--UCGGCGUugGCc -3'
miRNA:   3'- -GGCUGGUGCGGUGuagaAGCCGCG--CG- -5'
8111 5' -56.8 NC_001978.2 + 39835 0.69 0.436407
Target:  5'- -aGACCGCGCgGCA-----GGCGCGUa -3'
miRNA:   3'- ggCUGGUGCGgUGUagaagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 12032 0.69 0.436407
Target:  5'- gCCGACuggCAgGUgAUcgCUaCGGCGCGCg -3'
miRNA:   3'- -GGCUG---GUgCGgUGuaGAaGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 31228 0.69 0.436407
Target:  5'- uCCGACCG-GCCACAccgucaccacUCagcgcgUCGGCGC-Ca -3'
miRNA:   3'- -GGCUGGUgCGGUGU----------AGa-----AGCCGCGcG- -5'
8111 5' -56.8 NC_001978.2 + 11527 0.69 0.426839
Target:  5'- gCGACguCGCCuuACAUCgUgGGCGaCGCu -3'
miRNA:   3'- gGCUGguGCGG--UGUAGaAgCCGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.