miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 8616 0.68 0.475864
Target:  5'- aCGACaUACGCCauggcgcgaaGCAUCggggcaCGGCGCGa -3'
miRNA:   3'- gGCUG-GUGCGG----------UGUAGaa----GCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 10043 0.67 0.500372
Target:  5'- gCCGACCGuCGCCAUAg--UCGacccgaugcccucaaGCGCGg -3'
miRNA:   3'- -GGCUGGU-GCGGUGUagaAGC---------------CGCGCg -5'
8111 5' -56.8 NC_001978.2 + 10357 0.71 0.307019
Target:  5'- --aGCCACGCCGCcgCcaUUCGG-GCGCc -3'
miRNA:   3'- ggcUGGUGCGGUGuaG--AAGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 11527 0.69 0.426839
Target:  5'- gCGACguCGCCuuACAUCgUgGGCGaCGCu -3'
miRNA:   3'- gGCUGguGCGG--UGUAGaAgCCGC-GCG- -5'
8111 5' -56.8 NC_001978.2 + 12032 0.69 0.436407
Target:  5'- gCCGACuggCAgGUgAUcgCUaCGGCGCGCg -3'
miRNA:   3'- -GGCUG---GUgCGgUGuaGAaGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 12330 0.68 0.455905
Target:  5'- gCCGuCCGCuGCCgACGUCgUCaGCcGCGCa -3'
miRNA:   3'- -GGCuGGUG-CGG-UGUAGaAGcCG-CGCG- -5'
8111 5' -56.8 NC_001978.2 + 12867 0.66 0.612784
Target:  5'- uCUGACCcgACGCCcCAuagguguUCUgagUCgGGCGCGUa -3'
miRNA:   3'- -GGCUGG--UGCGGuGU-------AGA---AG-CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 13433 0.71 0.329581
Target:  5'- uCCGuGCCaAUGCCGcCGUCUUCGuugcacaGCGCGUa -3'
miRNA:   3'- -GGC-UGG-UGCGGU-GUAGAAGC-------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 13655 0.68 0.486005
Target:  5'- gCGACuCGCGCCuauGCGg--UCGGCGC-Cg -3'
miRNA:   3'- gGCUG-GUGCGG---UGUagaAGCCGCGcG- -5'
8111 5' -56.8 NC_001978.2 + 14873 0.83 0.051503
Target:  5'- aCCGGUCACGCCgACGUaaUCGGCGCGCu -3'
miRNA:   3'- -GGCUGGUGCGG-UGUAgaAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 15408 0.67 0.496247
Target:  5'- uCUGACCG----GCGUCgUUGGCGCGCg -3'
miRNA:   3'- -GGCUGGUgcggUGUAGaAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 15504 0.69 0.440268
Target:  5'- cCCGACUACGCCgACGUacgUUGccgucccgggucccaGCGCGUa -3'
miRNA:   3'- -GGCUGGUGCGG-UGUAga-AGC---------------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 16287 0.66 0.592026
Target:  5'- uUGACCgACGUCACGgcguUCgggUCGGCaaGCu -3'
miRNA:   3'- gGCUGG-UGCGGUGU----AGa--AGCCGcgCG- -5'
8111 5' -56.8 NC_001978.2 + 16476 0.67 0.531759
Target:  5'- aCCGACCACGCuUcgaagcccagcgcuuGCGgaguccaacuguUCUUCGGaacgGCGCu -3'
miRNA:   3'- -GGCUGGUGCG-G---------------UGU------------AGAAGCCg---CGCG- -5'
8111 5' -56.8 NC_001978.2 + 18946 0.67 0.527531
Target:  5'- cUCGACC-CGgCACG-CUgagcCGGaCGCGCa -3'
miRNA:   3'- -GGCUGGuGCgGUGUaGAa---GCC-GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 19296 0.77 0.135517
Target:  5'- cUCGACCACGCCcgACggCUUCauggcuuccccGGCGUGCg -3'
miRNA:   3'- -GGCUGGUGCGG--UGuaGAAG-----------CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 19365 0.68 0.483968
Target:  5'- cCCGACgGaCGCCgACGUgacgugcaagCGGUGCGCg -3'
miRNA:   3'- -GGCUGgU-GCGG-UGUAgaa-------GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 19526 0.68 0.455905
Target:  5'- aCCGAUCguGCGCCcCAUCcaUUCGucacCGCGCg -3'
miRNA:   3'- -GGCUGG--UGCGGuGUAG--AAGCc---GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 20418 0.68 0.464832
Target:  5'- gCCGACguCGCCgaagacuucaacgACAUUgaaGGCGUGCc -3'
miRNA:   3'- -GGCUGguGCGG-------------UGUAGaagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 20460 0.7 0.380938
Target:  5'- gCCGACCgGCGCgACucgaCUUCGGCcuuCGCc -3'
miRNA:   3'- -GGCUGG-UGCGgUGua--GAAGCCGc--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.