miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 503 0.67 0.538124
Target:  5'- cUCGACauaGCGaaGCAUCg--GGUGCGCg -3'
miRNA:   3'- -GGCUGg--UGCggUGUAGaagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 709 0.7 0.380938
Target:  5'- gCCGugUACGCCGCGU--UCaGCaaGCGCu -3'
miRNA:   3'- -GGCugGUGCGGUGUAgaAGcCG--CGCG- -5'
8111 5' -56.8 NC_001978.2 + 1045 0.68 0.455905
Target:  5'- aCGGCCAUGUCgaGCGUgUaguaaccCGGCGUGCg -3'
miRNA:   3'- gGCUGGUGCGG--UGUAgAa------GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 1482 0.67 0.503475
Target:  5'- uUCGGCCguugGCGCCggaaGCAUCggaccguuguugugUgcgUGGCGCGCa -3'
miRNA:   3'- -GGCUGG----UGCGG----UGUAG--------------Aa--GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 1620 0.68 0.446097
Target:  5'- gCCG-CCAaCGaCCGCaAUCa--GGCGCGCa -3'
miRNA:   3'- -GGCuGGU-GC-GGUG-UAGaagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 2792 0.66 0.563829
Target:  5'- gCCGuugucuUCACGCCACAUCacagcgccgugaaCGGCGaGCa -3'
miRNA:   3'- -GGCu-----GGUGCGGUGUAGaa-----------GCCGCgCG- -5'
8111 5' -56.8 NC_001978.2 + 3665 0.75 0.187967
Target:  5'- gCGG-CACGCCACG-CUUCG-CGCGCa -3'
miRNA:   3'- gGCUgGUGCGGUGUaGAAGCcGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 3743 0.7 0.363524
Target:  5'- uCCGGaaaUCGCGCga-AUCUUUGGCGUGCc -3'
miRNA:   3'- -GGCU---GGUGCGgugUAGAAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 4109 0.73 0.244584
Target:  5'- uCgGGCagggGCGUCAUGUCUucagCGGCGCGCa -3'
miRNA:   3'- -GgCUGg---UGCGGUGUAGAa---GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 4417 0.68 0.49009
Target:  5'- aCGugUACGCCACGUUcaaccacgacacgcgUUCccuacuGGgGCGCa -3'
miRNA:   3'- gGCugGUGCGGUGUAG---------------AAG------CCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 4895 0.71 0.321665
Target:  5'- gCGACCacucugaGCGCCAa--CUUUgaGGCGCGCg -3'
miRNA:   3'- gGCUGG-------UGCGGUguaGAAG--CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 5105 0.66 0.557369
Target:  5'- gUCGAuaCCGCGCUugAUCcggccgucaaagUCGGCGacCGCa -3'
miRNA:   3'- -GGCU--GGUGCGGugUAGa-----------AGCCGC--GCG- -5'
8111 5' -56.8 NC_001978.2 + 5140 0.75 0.17338
Target:  5'- gCCGACCACGacgacgaCGCcguUCUUCGuGCGgGCa -3'
miRNA:   3'- -GGCUGGUGCg------GUGu--AGAAGC-CGCgCG- -5'
8111 5' -56.8 NC_001978.2 + 5626 0.67 0.496247
Target:  5'- gCGACCgGCGCCAacgcugcCUUCGGUGagGCu -3'
miRNA:   3'- gGCUGG-UGCGGUgua----GAAGCCGCg-CG- -5'
8111 5' -56.8 NC_001978.2 + 6093 0.71 0.296557
Target:  5'- gUGACCgucagaaccuucGCGCCccggGCGUCgacaagaagaccgUCGGCGCGCu -3'
miRNA:   3'- gGCUGG------------UGCGG----UGUAGa------------AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6138 0.67 0.506586
Target:  5'- aUGGCuUACGCCACGauugaagagCUUCG-CGCGCu -3'
miRNA:   3'- gGCUG-GUGCGGUGUa--------GAAGCcGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6342 0.69 0.426839
Target:  5'- cUCGACCACGUgucgCGCAUUcccgaUCGG-GCGCu -3'
miRNA:   3'- -GGCUGGUGCG----GUGUAGa----AGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6350 0.68 0.454919
Target:  5'- aCCGAaucguuuCCgGCGUCGgGUCUUCGGcCGUGUc -3'
miRNA:   3'- -GGCU-------GG-UGCGGUgUAGAAGCC-GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6795 0.72 0.292159
Target:  5'- gUCGACCGgauUGCCcgGCGUCgugacaaCGGCGUGCg -3'
miRNA:   3'- -GGCUGGU---GCGG--UGUAGaa-----GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6839 0.67 0.510748
Target:  5'- gCGGCCuucacguaaucccgaAUGCCAUAca--CGGCGCGCu -3'
miRNA:   3'- gGCUGG---------------UGCGGUGUagaaGCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.