miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 1045 0.68 0.455905
Target:  5'- aCGGCCAUGUCgaGCGUgUaguaaccCGGCGUGCg -3'
miRNA:   3'- gGCUGGUGCGG--UGUAgAa------GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 24573 0.7 0.380938
Target:  5'- gUCGGCgGCGUCAUgGUCggcauaugugUCGGCGUGCu -3'
miRNA:   3'- -GGCUGgUGCGGUG-UAGa---------AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6342 0.69 0.426839
Target:  5'- cUCGACCACGUgucgCGCAUUcccgaUCGG-GCGCu -3'
miRNA:   3'- -GGCUGGUGCG----GUGUAGa----AGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 11527 0.69 0.426839
Target:  5'- gCGACguCGCCuuACAUCgUgGGCGaCGCu -3'
miRNA:   3'- gGCUGguGCGG--UGUAGaAgCCGC-GCG- -5'
8111 5' -56.8 NC_001978.2 + 39835 0.69 0.436407
Target:  5'- -aGACCGCGCgGCA-----GGCGCGUa -3'
miRNA:   3'- ggCUGGUGCGgUGUagaagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 12032 0.69 0.436407
Target:  5'- gCCGACuggCAgGUgAUcgCUaCGGCGCGCg -3'
miRNA:   3'- -GGCUG---GUgCGgUGuaGAaGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 31228 0.69 0.436407
Target:  5'- uCCGACCG-GCCACAccgucaccacUCagcgcgUCGGCGC-Ca -3'
miRNA:   3'- -GGCUGGUgCGGUGU----------AGa-----AGCCGCGcG- -5'
8111 5' -56.8 NC_001978.2 + 15504 0.69 0.440268
Target:  5'- cCCGACUACGCCgACGUacgUUGccgucccgggucccaGCGCGUa -3'
miRNA:   3'- -GGCUGGUGCGG-UGUAga-AGC---------------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 1620 0.68 0.446097
Target:  5'- gCCG-CCAaCGaCCGCaAUCa--GGCGCGCa -3'
miRNA:   3'- -GGCuGGU-GC-GGUG-UAGaagCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 22225 0.7 0.363524
Target:  5'- aCGGCUAUGCCGgAUCgUUCGauguggucauGCGCGUa -3'
miRNA:   3'- gGCUGGUGCGGUgUAG-AAGC----------CGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 3743 0.7 0.363524
Target:  5'- uCCGGaaaUCGCGCga-AUCUUUGGCGUGCc -3'
miRNA:   3'- -GGCU---GGUGCGgugUAGAAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 36345 0.7 0.338453
Target:  5'- aCGACgACGCC-CuUCgUCaGCGCGCa -3'
miRNA:   3'- gGCUGgUGCGGuGuAGaAGcCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 19296 0.77 0.135517
Target:  5'- cUCGACCACGCCcgACggCUUCauggcuuccccGGCGUGCg -3'
miRNA:   3'- -GGCUGGUGCGG--UGuaGAAG-----------CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 5140 0.75 0.17338
Target:  5'- gCCGACCACGacgacgaCGCcguUCUUCGuGCGgGCa -3'
miRNA:   3'- -GGCUGGUGCg------GUGu--AGAAGC-CGCgCG- -5'
8111 5' -56.8 NC_001978.2 + 32895 0.73 0.220399
Target:  5'- gUCGACCACGCCgACA-CUgagcCGGuCGUGCc -3'
miRNA:   3'- -GGCUGGUGCGG-UGUaGAa---GCC-GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 34223 0.73 0.236491
Target:  5'- gCCGACCACGCUgagcgcaacgcgauACGUCaugcgccgUCGGCGgaGCu -3'
miRNA:   3'- -GGCUGGUGCGG--------------UGUAGa-------AGCCGCg-CG- -5'
8111 5' -56.8 NC_001978.2 + 24916 0.72 0.270933
Target:  5'- gCCGACgCuGCGCacaACAUgCUUcCGGCGUGCg -3'
miRNA:   3'- -GGCUG-G-UGCGg--UGUA-GAA-GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 26813 0.71 0.299518
Target:  5'- aCGACCuuGCCGCG-CUUCGugguuCGCGCc -3'
miRNA:   3'- gGCUGGugCGGUGUaGAAGCc----GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 31667 0.71 0.314663
Target:  5'- gCCGACgACGCCcuuuaugacauuGCGUCguuugagCGGUGCGg -3'
miRNA:   3'- -GGCUGgUGCGG------------UGUAGaa-----GCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 4895 0.71 0.321665
Target:  5'- gCGACCacucugaGCGCCAa--CUUUgaGGCGCGCg -3'
miRNA:   3'- gGCUGG-------UGCGGUguaGAAG--CCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.