miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8111 5' -56.8 NC_001978.2 + 22260 1.14 0.000279
Target:  5'- uCCGACCACGCCACAUCUUCGGCGCGCa -3'
miRNA:   3'- -GGCUGGUGCGGUGUAGAAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 14873 0.83 0.051503
Target:  5'- aCCGGUCACGCCgACGUaaUCGGCGCGCu -3'
miRNA:   3'- -GGCUGGUGCGG-UGUAgaAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 23778 0.78 0.102463
Target:  5'- uCCGcAUCGgGCCACG-CUUCGGCGUGUa -3'
miRNA:   3'- -GGC-UGGUgCGGUGUaGAAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 19296 0.77 0.135517
Target:  5'- cUCGACCACGCCcgACggCUUCauggcuuccccGGCGUGCg -3'
miRNA:   3'- -GGCUGGUGCGG--UGuaGAAG-----------CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 5140 0.75 0.17338
Target:  5'- gCCGACCACGacgacgaCGCcguUCUUCGuGCGgGCa -3'
miRNA:   3'- -GGCUGGUGCg------GUGu--AGAAGC-CGCgCG- -5'
8111 5' -56.8 NC_001978.2 + 3665 0.75 0.187967
Target:  5'- gCGG-CACGCCACG-CUUCG-CGCGCa -3'
miRNA:   3'- gGCUgGUGCGGUGUaGAAGCcGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 30444 0.73 0.220399
Target:  5'- cCCuGCCACGCgagccggGCggCUUCGGCGCGUu -3'
miRNA:   3'- -GGcUGGUGCGg------UGuaGAAGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 32895 0.73 0.220399
Target:  5'- gUCGACCACGCCgACA-CUgagcCGGuCGUGCc -3'
miRNA:   3'- -GGCUGGUGCGG-UGUaGAa---GCC-GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 34223 0.73 0.236491
Target:  5'- gCCGACCACGCUgagcgcaacgcgauACGUCaugcgccgUCGGCGgaGCu -3'
miRNA:   3'- -GGCUGGUGCGG--------------UGUAGa-------AGCCGCg-CG- -5'
8111 5' -56.8 NC_001978.2 + 4109 0.73 0.244584
Target:  5'- uCgGGCagggGCGUCAUGUCUucagCGGCGCGCa -3'
miRNA:   3'- -GgCUGg---UGCGGUGUAGAa---GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 39769 0.73 0.250965
Target:  5'- gCGGCUucccacagaaGCGCCaACGUCUcuucgucgccuUCGGCGUGCc -3'
miRNA:   3'- gGCUGG----------UGCGG-UGUAGA-----------AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 26519 0.72 0.264139
Target:  5'- gUCGACCACGCCguucGCGaagCUcaacaGGUGCGCg -3'
miRNA:   3'- -GGCUGGUGCGG----UGUa--GAag---CCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 24916 0.72 0.270933
Target:  5'- gCCGACgCuGCGCacaACAUgCUUcCGGCGUGCg -3'
miRNA:   3'- -GGCUG-G-UGCGg--UGUA-GAA-GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6795 0.72 0.292159
Target:  5'- gUCGACCGgauUGCCcgGCGUCgugacaaCGGCGUGCg -3'
miRNA:   3'- -GGCUGGU---GCGG--UGUAGaa-----GCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 6093 0.71 0.296557
Target:  5'- gUGACCgucagaaccuucGCGCCccggGCGUCgacaagaagaccgUCGGCGCGCu -3'
miRNA:   3'- gGCUGG------------UGCGG----UGUAGa------------AGCCGCGCG- -5'
8111 5' -56.8 NC_001978.2 + 38219 0.71 0.299518
Target:  5'- gCCGcGCCACGCCuucgggACGUCagCGGCuCGCc -3'
miRNA:   3'- -GGC-UGGUGCGG------UGUAGaaGCCGcGCG- -5'
8111 5' -56.8 NC_001978.2 + 26813 0.71 0.299518
Target:  5'- aCGACCuuGCCGCG-CUUCGugguuCGCGCc -3'
miRNA:   3'- gGCUGGugCGGUGUaGAAGCc----GCGCG- -5'
8111 5' -56.8 NC_001978.2 + 10357 0.71 0.307019
Target:  5'- --aGCCACGCCGCcgCcaUUCGG-GCGCc -3'
miRNA:   3'- ggcUGGUGCGGUGuaG--AAGCCgCGCG- -5'
8111 5' -56.8 NC_001978.2 + 31667 0.71 0.314663
Target:  5'- gCCGACgACGCCcuuuaugacauuGCGUCguuugagCGGUGCGg -3'
miRNA:   3'- -GGCUGgUGCGG------------UGUAGaa-----GCCGCGCg -5'
8111 5' -56.8 NC_001978.2 + 4895 0.71 0.321665
Target:  5'- gCGACCacucugaGCGCCAa--CUUUgaGGCGCGCg -3'
miRNA:   3'- gGCUGG-------UGCGGUguaGAAG--CCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.