miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8113 3' -54.7 NC_001978.2 + 27526 0.66 0.674868
Target:  5'- gAGUAGcuuGGGGGcgcuUCGGCAuuccCCCggGUUGCCg -3'
miRNA:   3'- -UCAUU---CCCUC----AGCCGUu---GGG--CGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 41223 0.66 0.674868
Target:  5'- cGUAAGGcAGUgGGCGcgcACUgUGCUACCu -3'
miRNA:   3'- uCAUUCCcUCAgCCGU---UGG-GCGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 23069 0.66 0.674868
Target:  5'- -cUGAaGGAcGUCGGCAACCCGg-GCg -3'
miRNA:   3'- ucAUUcCCU-CAGCCGUUGGGCgaUGg -5'
8113 3' -54.7 NC_001978.2 + 30506 0.66 0.674868
Target:  5'- cGGcAAGGGAaccGUCGGCGuCCgCGUUcucaGCCg -3'
miRNA:   3'- -UCaUUCCCU---CAGCCGUuGG-GCGA----UGG- -5'
8113 3' -54.7 NC_001978.2 + 15327 0.66 0.65244
Target:  5'- ----cGGcaacGUCGGCGuucgucuuCCCGCUACCg -3'
miRNA:   3'- ucauuCCcu--CAGCCGUu-------GGGCGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 18306 0.66 0.65244
Target:  5'- gAGUGAGauuugagccGGAGcCGGCAuGCCCGa-ACCc -3'
miRNA:   3'- -UCAUUC---------CCUCaGCCGU-UGGGCgaUGG- -5'
8113 3' -54.7 NC_001978.2 + 40350 0.68 0.573879
Target:  5'- --cGGGGGAc-CGGCcgacccuuCCCGCUGCCc -3'
miRNA:   3'- ucaUUCCCUcaGCCGuu------GGGCGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 365 0.68 0.562781
Target:  5'- cGUGucgGGGGAGUaGGCGcccauACCgGCUuGCCa -3'
miRNA:   3'- uCAU---UCCCUCAgCCGU-----UGGgCGA-UGG- -5'
8113 3' -54.7 NC_001978.2 + 18268 0.68 0.551742
Target:  5'- uGUAAGGGGGcgccaUgGGCGACCacaGCaaGCCg -3'
miRNA:   3'- uCAUUCCCUC-----AgCCGUUGGg--CGa-UGG- -5'
8113 3' -54.7 NC_001978.2 + 16145 0.68 0.551742
Target:  5'- --cAAGGGAGUugcgucCGGCGuuGCCaCGCUgggcACCg -3'
miRNA:   3'- ucaUUCCCUCA------GCCGU--UGG-GCGA----UGG- -5'
8113 3' -54.7 NC_001978.2 + 13194 0.69 0.508325
Target:  5'- cGUGucGGGGUCGGCAGCgUCGagcggcauucCUACCg -3'
miRNA:   3'- uCAUucCCUCAGCCGUUG-GGC----------GAUGG- -5'
8113 3' -54.7 NC_001978.2 + 26256 0.69 0.497691
Target:  5'- cGUGAccuGGGugaAGUCGGCAACgCGCgUGCg -3'
miRNA:   3'- uCAUU---CCC---UCAGCCGUUGgGCG-AUGg -5'
8113 3' -54.7 NC_001978.2 + 20882 0.7 0.426368
Target:  5'- cGGgcAGGGAaUCGaGCuucCCCGCUACg -3'
miRNA:   3'- -UCauUCCCUcAGC-CGuu-GGGCGAUGg -5'
8113 3' -54.7 NC_001978.2 + 40697 0.71 0.388435
Target:  5'- cGUAaucAGGGGGUCGGCggUUCGaauCCg -3'
miRNA:   3'- uCAU---UCCCUCAGCCGuuGGGCgauGG- -5'
8113 3' -54.7 NC_001978.2 + 16258 0.73 0.288654
Target:  5'- aAGcUGGGGGAGUUGGUcagucggaacaAGCCCGUcggUGCCc -3'
miRNA:   3'- -UC-AUUCCCUCAGCCG-----------UUGGGCG---AUGG- -5'
8113 3' -54.7 NC_001978.2 + 15408 0.73 0.286436
Target:  5'- --cGGGGGAGUCGGUAgcgggaagacgaacGCCgaCGUUGCCg -3'
miRNA:   3'- ucaUUCCCUCAGCCGU--------------UGG--GCGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 20752 0.73 0.281314
Target:  5'- --cGAGGGAGUUGuGCGcCCC-CUGCCg -3'
miRNA:   3'- ucaUUCCCUCAGC-CGUuGGGcGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 35528 0.76 0.178266
Target:  5'- -----cGGAGaCGGCAuACCCGCUGCCg -3'
miRNA:   3'- ucauucCCUCaGCCGU-UGGGCGAUGG- -5'
8113 3' -54.7 NC_001978.2 + 13022 0.77 0.155053
Target:  5'- --gAAGGGAGUCGGCAACCCuC-ACg -3'
miRNA:   3'- ucaUUCCCUCAGCCGUUGGGcGaUGg -5'
8113 3' -54.7 NC_001978.2 + 17238 0.79 0.110145
Target:  5'- cAGgcuGGGGAGUCGGCGcacuACCCGCgcacgGCUu -3'
miRNA:   3'- -UCau-UCCCUCAGCCGU----UGGGCGa----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.