Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8113 | 3' | -54.7 | NC_001978.2 | + | 29938 | 0.8 | 0.10701 |
Target: 5'- gGGUAAGGaAGUCGGCAACCCGg-GCa -3' miRNA: 3'- -UCAUUCCcUCAGCCGUUGGGCgaUGg -5' |
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8113 | 3' | -54.7 | NC_001978.2 | + | 18531 | 0.82 | 0.077649 |
Target: 5'- cGUGaAGGGAGUCGGCAACCUGagcggcgcuaUGCCc -3' miRNA: 3'- uCAU-UCCCUCAGCCGUUGGGCg---------AUGG- -5' |
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8113 | 3' | -54.7 | NC_001978.2 | + | 31220 | 0.83 | 0.057783 |
Target: 5'- cAGUAAGGaAGUCGGCAACCCGggGCg -3' miRNA: 3'- -UCAUUCCcUCAGCCGUUGGGCgaUGg -5' |
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8113 | 3' | -54.7 | NC_001978.2 | + | 25089 | 0.89 | 0.022785 |
Target: 5'- cGUAAGGGAGUCGGCAACCCgGCUc-- -3' miRNA: 3'- uCAUUCCCUCAGCCGUUGGG-CGAugg -5' |
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8113 | 3' | -54.7 | NC_001978.2 | + | 27616 | 0.95 | 0.008619 |
Target: 5'- cGUAAGGGAGUCGGCAACCCGggggaaUGCCg -3' miRNA: 3'- uCAUUCCCUCAGCCGUUGGGCg-----AUGG- -5' |
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8113 | 3' | -54.7 | NC_001978.2 | + | 36248 | 0.97 | 0.005798 |
Target: 5'- cAGUAAGGGAGUCGGCAACCCGggACUa -3' miRNA: 3'- -UCAUUCCCUCAGCCGUUGGGCgaUGG- -5' |
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8113 | 3' | -54.7 | NC_001978.2 | + | 22705 | 1.13 | 0.000431 |
Target: 5'- gAGUAAGGGAGUCGGCAACCCGCUACCg -3' miRNA: 3'- -UCAUUCCCUCAGCCGUUGGGCGAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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