Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8113 | 3' | -54.7 | NC_001978.2 | + | 40350 | 0.68 | 0.573879 |
Target: 5'- --cGGGGGAc-CGGCcgacccuuCCCGCUGCCc -3' miRNA: 3'- ucaUUCCCUcaGCCGuu------GGGCGAUGG- -5' |
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8113 | 3' | -54.7 | NC_001978.2 | + | 15327 | 0.66 | 0.65244 |
Target: 5'- ----cGGcaacGUCGGCGuucgucuuCCCGCUACCg -3' miRNA: 3'- ucauuCCcu--CAGCCGUu-------GGGCGAUGG- -5' |
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8113 | 3' | -54.7 | NC_001978.2 | + | 18306 | 0.66 | 0.65244 |
Target: 5'- gAGUGAGauuugagccGGAGcCGGCAuGCCCGa-ACCc -3' miRNA: 3'- -UCAUUC---------CCUCaGCCGU-UGGGCgaUGG- -5' |
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8113 | 3' | -54.7 | NC_001978.2 | + | 30506 | 0.66 | 0.674868 |
Target: 5'- cGGcAAGGGAaccGUCGGCGuCCgCGUUcucaGCCg -3' miRNA: 3'- -UCaUUCCCU---CAGCCGUuGG-GCGA----UGG- -5' |
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8113 | 3' | -54.7 | NC_001978.2 | + | 23069 | 0.66 | 0.674868 |
Target: 5'- -cUGAaGGAcGUCGGCAACCCGg-GCg -3' miRNA: 3'- ucAUUcCCU-CAGCCGUUGGGCgaUGg -5' |
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8113 | 3' | -54.7 | NC_001978.2 | + | 41223 | 0.66 | 0.674868 |
Target: 5'- cGUAAGGcAGUgGGCGcgcACUgUGCUACCu -3' miRNA: 3'- uCAUUCCcUCAgCCGU---UGG-GCGAUGG- -5' |
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8113 | 3' | -54.7 | NC_001978.2 | + | 27526 | 0.66 | 0.674868 |
Target: 5'- gAGUAGcuuGGGGGcgcuUCGGCAuuccCCCggGUUGCCg -3' miRNA: 3'- -UCAUU---CCCUC----AGCCGUu---GGG--CGAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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