Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8115 | 5' | -63.1 | NC_001978.2 | + | 36745 | 0.73 | 0.093765 |
Target: 5'- -cGcCCCAGGCcguucaggacguccUUCCGGagcCGACGCCGGa -3' miRNA: 3'- caC-GGGUCCG--------------AAGGCC---GCUGCGGCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 23799 | 0.66 | 0.291077 |
Target: 5'- uUGCCgacuaguggCAGcGCUcgacCCGGCGuCGCCGGa -3' miRNA: 3'- cACGG---------GUC-CGAa---GGCCGCuGCGGCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 32974 | 0.66 | 0.277251 |
Target: 5'- -cGCCgaAGcGCUUCaGGCGuacgACGCUGGGg -3' miRNA: 3'- caCGGg-UC-CGAAGgCCGC----UGCGGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 791 | 0.66 | 0.277251 |
Target: 5'- cGUGCCCAGucGCgcgCCca-GGCGCCGGa -3' miRNA: 3'- -CACGGGUC--CGaa-GGccgCUGCGGCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 4090 | 0.66 | 0.270537 |
Target: 5'- gGUGCCgcugaaccUGGGCgaagUCGGCGAagaGCCGGa -3' miRNA: 3'- -CACGG--------GUCCGaa--GGCCGCUg--CGGCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 4194 | 0.67 | 0.257502 |
Target: 5'- -aGCCggaAGGCaagCCGGaCGACGaaGGGg -3' miRNA: 3'- caCGGg--UCCGaa-GGCC-GCUGCggCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 19304 | 0.67 | 0.238918 |
Target: 5'- -cGCCCGacggcuucauGGCUUCCccggcgugcGGCGGCaaCCGGGc -3' miRNA: 3'- caCGGGU----------CCGAAGG---------CCGCUGc-GGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 15618 | 0.68 | 0.204591 |
Target: 5'- -cGCUCAcgcguucaacGGCUcgacgguUCCGGCGGCuucGCUGGGg -3' miRNA: 3'- caCGGGU----------CCGA-------AGGCCGCUG---CGGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 17575 | 0.68 | 0.189822 |
Target: 5'- -aGCacaAGGCgaCCGGCGACGuuGGc -3' miRNA: 3'- caCGgg-UCCGaaGGCCGCUGCggCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 34118 | 0.69 | 0.170993 |
Target: 5'- gGUGCCC---CUUCCGGCG-UGCCcGGGu -3' miRNA: 3'- -CACGGGuccGAAGGCCGCuGCGG-CCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 25441 | 0.7 | 0.157984 |
Target: 5'- -cGCCCAGGCUga----GGCGCUGGGg -3' miRNA: 3'- caCGGGUCCGAaggccgCUGCGGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 21684 | 0.67 | 0.232977 |
Target: 5'- -aGCCCAGGUcaUCCGcuguGCGGCGCUGuGa -3' miRNA: 3'- caCGGGUCCGa-AGGC----CGCUGCGGC-Cc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 29460 | 0.67 | 0.244985 |
Target: 5'- -gGCCCccuAGGUcagcgUCGGCGACGaCGGGc -3' miRNA: 3'- caCGGG---UCCGaa---GGCCGCUGCgGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 24453 | 0.67 | 0.244985 |
Target: 5'- -cGCCCAGGg--CaGGCGcaGCGUCGGGc -3' miRNA: 3'- caCGGGUCCgaaGgCCGC--UGCGGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 38331 | 0.67 | 0.250554 |
Target: 5'- -aGCCCcgGGGCaUCCGcUGAggguugcCGCCGGGg -3' miRNA: 3'- caCGGG--UCCGaAGGCcGCU-------GCGGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 27293 | 0.67 | 0.257502 |
Target: 5'- -cGCCCGGGaagaaaCCGGCGAgCGCauCGGa -3' miRNA: 3'- caCGGGUCCgaa---GGCCGCU-GCG--GCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 30396 | 0.66 | 0.263954 |
Target: 5'- uUGCCCuucGGCgggaugaUCUGuGCGA-GCCGGGc -3' miRNA: 3'- cACGGGu--CCGa------AGGC-CGCUgCGGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 19601 | 0.66 | 0.263954 |
Target: 5'- --aCCCGGGCgugaUgUGGuCGGCGCCGGu -3' miRNA: 3'- cacGGGUCCGa---AgGCC-GCUGCGGCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 28120 | 0.66 | 0.284097 |
Target: 5'- -cGCCCuGaGUgUCCGGCGcCGaCGGGu -3' miRNA: 3'- caCGGGuC-CGaAGGCCGCuGCgGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 23889 | 1.08 | 0.000145 |
Target: 5'- uGUGCCCAGGCUUCCGGCGACGCCGGGu -3' miRNA: 3'- -CACGGGUCCGAAGGCCGCUGCGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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