miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8115 5' -63.1 NC_001978.2 + 791 0.66 0.277251
Target:  5'- cGUGCCCAGucGCgcgCCca-GGCGCCGGa -3'
miRNA:   3'- -CACGGGUC--CGaa-GGccgCUGCGGCCc -5'
8115 5' -63.1 NC_001978.2 + 4090 0.66 0.270537
Target:  5'- gGUGCCgcugaaccUGGGCgaagUCGGCGAagaGCCGGa -3'
miRNA:   3'- -CACGG--------GUCCGaa--GGCCGCUg--CGGCCc -5'
8115 5' -63.1 NC_001978.2 + 4178 0.69 0.180189
Target:  5'- -gGCUCAGGC-UCCGGCucuuCGCCGa- -3'
miRNA:   3'- caCGGGUCCGaAGGCCGcu--GCGGCcc -5'
8115 5' -63.1 NC_001978.2 + 4194 0.67 0.257502
Target:  5'- -aGCCggaAGGCaagCCGGaCGACGaaGGGg -3'
miRNA:   3'- caCGGg--UCCGaa-GGCC-GCUGCggCCC- -5'
8115 5' -63.1 NC_001978.2 + 8170 0.72 0.105491
Target:  5'- -cGUCCGGGCUUUCGuGCuuCGCCuGGGg -3'
miRNA:   3'- caCGGGUCCGAAGGC-CGcuGCGG-CCC- -5'
8115 5' -63.1 NC_001978.2 + 13208 0.68 0.210448
Target:  5'- -cGCCCAGGCUgaa-GCG-UGUCGGGg -3'
miRNA:   3'- caCGGGUCCGAaggcCGCuGCGGCCC- -5'
8115 5' -63.1 NC_001978.2 + 15618 0.68 0.204591
Target:  5'- -cGCUCAcgcguucaacGGCUcgacgguUCCGGCGGCuucGCUGGGg -3'
miRNA:   3'- caCGGGU----------CCGA-------AGGCCGCUG---CGGCCC- -5'
8115 5' -63.1 NC_001978.2 + 16796 0.74 0.069724
Target:  5'- -cGCCCAGGCUgaagCaCGGuCGACGCaauGGGc -3'
miRNA:   3'- caCGGGUCCGAa---G-GCC-GCUGCGg--CCC- -5'
8115 5' -63.1 NC_001978.2 + 17575 0.68 0.189822
Target:  5'- -aGCacaAGGCgaCCGGCGACGuuGGc -3'
miRNA:   3'- caCGgg-UCCGaaGGCCGCUGCggCCc -5'
8115 5' -63.1 NC_001978.2 + 19304 0.67 0.238918
Target:  5'- -cGCCCGacggcuucauGGCUUCCccggcgugcGGCGGCaaCCGGGc -3'
miRNA:   3'- caCGGGU----------CCGAAGG---------CCGCUGc-GGCCC- -5'
8115 5' -63.1 NC_001978.2 + 19392 0.7 0.142032
Target:  5'- aUGCCC-GGUUgCCGcCGcACGCCGGGg -3'
miRNA:   3'- cACGGGuCCGAaGGCcGC-UGCGGCCC- -5'
8115 5' -63.1 NC_001978.2 + 19601 0.66 0.263954
Target:  5'- --aCCCGGGCgugaUgUGGuCGGCGCCGGu -3'
miRNA:   3'- cacGGGUCCGa---AgGCC-GCUGCGGCCc -5'
8115 5' -63.1 NC_001978.2 + 21684 0.67 0.232977
Target:  5'- -aGCCCAGGUcaUCCGcuguGCGGCGCUGuGa -3'
miRNA:   3'- caCGGGUCCGa-AGGC----CGCUGCGGC-Cc -5'
8115 5' -63.1 NC_001978.2 + 22367 0.7 0.157566
Target:  5'- -cGCCCaugaucaggugAGGCUUcCCGGaccggucCGGCGUCGGGu -3'
miRNA:   3'- caCGGG-----------UCCGAA-GGCC-------GCUGCGGCCC- -5'
8115 5' -63.1 NC_001978.2 + 22887 0.69 0.170993
Target:  5'- -aGCCCAGcGCggggaCGGCGGCGuuGuGGc -3'
miRNA:   3'- caCGGGUC-CGaag--GCCGCUGCggC-CC- -5'
8115 5' -63.1 NC_001978.2 + 23799 0.66 0.291077
Target:  5'- uUGCCgacuaguggCAGcGCUcgacCCGGCGuCGCCGGa -3'
miRNA:   3'- cACGG---------GUC-CGAa---GGCCGCuGCGGCCc -5'
8115 5' -63.1 NC_001978.2 + 23889 1.08 0.000145
Target:  5'- uGUGCCCAGGCUUCCGGCGACGCCGGGu -3'
miRNA:   3'- -CACGGGUCCGAAGGCCGCUGCGGCCC- -5'
8115 5' -63.1 NC_001978.2 + 23960 0.68 0.215898
Target:  5'- -cGCgaCGGGCUUCCGGCGGguacUGCCa-- -3'
miRNA:   3'- caCGg-GUCCGAAGGCCGCU----GCGGccc -5'
8115 5' -63.1 NC_001978.2 + 24453 0.67 0.244985
Target:  5'- -cGCCCAGGg--CaGGCGcaGCGUCGGGc -3'
miRNA:   3'- caCGGGUCCgaaGgCCGC--UGCGGCCC- -5'
8115 5' -63.1 NC_001978.2 + 25441 0.7 0.157984
Target:  5'- -cGCCCAGGCUga----GGCGCUGGGg -3'
miRNA:   3'- caCGGGUCCGAaggccgCUGCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.