miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8115 5' -63.1 NC_001978.2 + 38331 0.67 0.250554
Target:  5'- -aGCCCcgGGGCaUCCGcUGAggguugcCGCCGGGg -3'
miRNA:   3'- caCGGG--UCCGaAGGCcGCU-------GCGGCCC- -5'
8115 5' -63.1 NC_001978.2 + 36929 0.66 0.29819
Target:  5'- ---aCCGGGUUcagCCGGUGACGCCa-- -3'
miRNA:   3'- cacgGGUCCGAa--GGCCGCUGCGGccc -5'
8115 5' -63.1 NC_001978.2 + 36886 0.73 0.091976
Target:  5'- uUGCCUGGGCgUUCGGCagacGCGCCGGa -3'
miRNA:   3'- cACGGGUCCGaAGGCCGc---UGCGGCCc -5'
8115 5' -63.1 NC_001978.2 + 36836 0.71 0.127567
Target:  5'- -gGCUCAGGC-UCCGGCGuCGgcuCCGGa -3'
miRNA:   3'- caCGGGUCCGaAGGCCGCuGC---GGCCc -5'
8115 5' -63.1 NC_001978.2 + 36745 0.73 0.093765
Target:  5'- -cGcCCCAGGCcguucaggacguccUUCCGGagcCGACGCCGGa -3'
miRNA:   3'- caC-GGGUCCG--------------AAGGCC---GCUGCGGCCc -5'
8115 5' -63.1 NC_001978.2 + 36059 0.69 0.166553
Target:  5'- -cGCCCGGGU---CGGCGGCagucuCCGGGg -3'
miRNA:   3'- caCGGGUCCGaagGCCGCUGc----GGCCC- -5'
8115 5' -63.1 NC_001978.2 + 34215 0.71 0.132468
Target:  5'- uUGCCCacguGGGCacgcUCCGGCGgacgcacacccgggcACGCCGGa -3'
miRNA:   3'- cACGGG----UCCGa---AGGCCGC---------------UGCGGCCc -5'
8115 5' -63.1 NC_001978.2 + 34118 0.69 0.170993
Target:  5'- gGUGCCC---CUUCCGGCG-UGCCcGGGu -3'
miRNA:   3'- -CACGGGuccGAAGGCCGCuGCGG-CCC- -5'
8115 5' -63.1 NC_001978.2 + 32974 0.66 0.277251
Target:  5'- -cGCCgaAGcGCUUCaGGCGuacgACGCUGGGg -3'
miRNA:   3'- caCGGg-UC-CGAAGgCCGC----UGCGGCCC- -5'
8115 5' -63.1 NC_001978.2 + 32798 0.68 0.210448
Target:  5'- uUGCCCAGGUaacCCGGguucgaagcCGuCGCCGGa -3'
miRNA:   3'- cACGGGUCCGaa-GGCC---------GCuGCGGCCc -5'
8115 5' -63.1 NC_001978.2 + 30396 0.66 0.263954
Target:  5'- uUGCCCuucGGCgggaugaUCUGuGCGA-GCCGGGc -3'
miRNA:   3'- cACGGGu--CCGa------AGGC-CGCUgCGGCCC- -5'
8115 5' -63.1 NC_001978.2 + 29460 0.67 0.244985
Target:  5'- -gGCCCccuAGGUcagcgUCGGCGACGaCGGGc -3'
miRNA:   3'- caCGGG---UCCGaa---GGCCGCUGCgGCCC- -5'
8115 5' -63.1 NC_001978.2 + 28280 0.67 0.227162
Target:  5'- aUGCUCAGGCgcgcgugUUCGGCGucaAgGCaCGGGu -3'
miRNA:   3'- cACGGGUCCGa------AGGCCGC---UgCG-GCCC- -5'
8115 5' -63.1 NC_001978.2 + 28120 0.66 0.284097
Target:  5'- -cGCCCuGaGUgUCCGGCGcCGaCGGGu -3'
miRNA:   3'- caCGGGuC-CGaAGGCCGCuGCgGCCC- -5'
8115 5' -63.1 NC_001978.2 + 27293 0.67 0.257502
Target:  5'- -cGCCCGGGaagaaaCCGGCGAgCGCauCGGa -3'
miRNA:   3'- caCGGGUCCgaa---GGCCGCU-GCG--GCCc -5'
8115 5' -63.1 NC_001978.2 + 25441 0.7 0.157984
Target:  5'- -cGCCCAGGCUga----GGCGCUGGGg -3'
miRNA:   3'- caCGGGUCCGAaggccgCUGCGGCCC- -5'
8115 5' -63.1 NC_001978.2 + 24453 0.67 0.244985
Target:  5'- -cGCCCAGGg--CaGGCGcaGCGUCGGGc -3'
miRNA:   3'- caCGGGUCCgaaGgCCGC--UGCGGCCC- -5'
8115 5' -63.1 NC_001978.2 + 23960 0.68 0.215898
Target:  5'- -cGCgaCGGGCUUCCGGCGGguacUGCCa-- -3'
miRNA:   3'- caCGg-GUCCGAAGGCCGCU----GCGGccc -5'
8115 5' -63.1 NC_001978.2 + 23889 1.08 0.000145
Target:  5'- uGUGCCCAGGCUUCCGGCGACGCCGGGu -3'
miRNA:   3'- -CACGGGUCCGAAGGCCGCUGCGGCCC- -5'
8115 5' -63.1 NC_001978.2 + 23799 0.66 0.291077
Target:  5'- uUGCCgacuaguggCAGcGCUcgacCCGGCGuCGCCGGa -3'
miRNA:   3'- cACGG---------GUC-CGAa---GGCCGCuGCGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.