Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8115 | 5' | -63.1 | NC_001978.2 | + | 27293 | 0.67 | 0.257502 |
Target: 5'- -cGCCCGGGaagaaaCCGGCGAgCGCauCGGa -3' miRNA: 3'- caCGGGUCCgaa---GGCCGCU-GCG--GCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 28120 | 0.66 | 0.284097 |
Target: 5'- -cGCCCuGaGUgUCCGGCGcCGaCGGGu -3' miRNA: 3'- caCGGGuC-CGaAGGCCGCuGCgGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 28280 | 0.67 | 0.227162 |
Target: 5'- aUGCUCAGGCgcgcgugUUCGGCGucaAgGCaCGGGu -3' miRNA: 3'- cACGGGUCCGa------AGGCCGC---UgCG-GCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 29460 | 0.67 | 0.244985 |
Target: 5'- -gGCCCccuAGGUcagcgUCGGCGACGaCGGGc -3' miRNA: 3'- caCGGG---UCCGaa---GGCCGCUGCgGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 30396 | 0.66 | 0.263954 |
Target: 5'- uUGCCCuucGGCgggaugaUCUGuGCGA-GCCGGGc -3' miRNA: 3'- cACGGGu--CCGa------AGGC-CGCUgCGGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 32798 | 0.68 | 0.210448 |
Target: 5'- uUGCCCAGGUaacCCGGguucgaagcCGuCGCCGGa -3' miRNA: 3'- cACGGGUCCGaa-GGCC---------GCuGCGGCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 32974 | 0.66 | 0.277251 |
Target: 5'- -cGCCgaAGcGCUUCaGGCGuacgACGCUGGGg -3' miRNA: 3'- caCGGg-UC-CGAAGgCCGC----UGCGGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 34118 | 0.69 | 0.170993 |
Target: 5'- gGUGCCC---CUUCCGGCG-UGCCcGGGu -3' miRNA: 3'- -CACGGGuccGAAGGCCGCuGCGG-CCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 34215 | 0.71 | 0.132468 |
Target: 5'- uUGCCCacguGGGCacgcUCCGGCGgacgcacacccgggcACGCCGGa -3' miRNA: 3'- cACGGG----UCCGa---AGGCCGC---------------UGCGGCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 36059 | 0.69 | 0.166553 |
Target: 5'- -cGCCCGGGU---CGGCGGCagucuCCGGGg -3' miRNA: 3'- caCGGGUCCGaagGCCGCUGc----GGCCC- -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 36745 | 0.73 | 0.093765 |
Target: 5'- -cGcCCCAGGCcguucaggacguccUUCCGGagcCGACGCCGGa -3' miRNA: 3'- caC-GGGUCCG--------------AAGGCC---GCUGCGGCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 36836 | 0.71 | 0.127567 |
Target: 5'- -gGCUCAGGC-UCCGGCGuCGgcuCCGGa -3' miRNA: 3'- caCGGGUCCGaAGGCCGCuGC---GGCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 36886 | 0.73 | 0.091976 |
Target: 5'- uUGCCUGGGCgUUCGGCagacGCGCCGGa -3' miRNA: 3'- cACGGGUCCGaAGGCCGc---UGCGGCCc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 36929 | 0.66 | 0.29819 |
Target: 5'- ---aCCGGGUUcagCCGGUGACGCCa-- -3' miRNA: 3'- cacgGGUCCGAa--GGCCGCUGCGGccc -5' |
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8115 | 5' | -63.1 | NC_001978.2 | + | 38331 | 0.67 | 0.250554 |
Target: 5'- -aGCCCcgGGGCaUCCGcUGAggguugcCGCCGGGg -3' miRNA: 3'- caCGGG--UCCGaAGGCcGCU-------GCGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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